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[177555_at]

Description F09B9.4 /REP_DB=WormBase Gene ID /WP=CE09275 /TR=Q93195 /GB=CAA90059.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 63      4grp_high_8_8 > 20      6grp_highest_nonorm > 35      6grp_total > 62      4grp_total > 28      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 03      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1044
1 2 3 4 range
A 3304.1
(-3)
P 		4081.2
(3)
P 		3431
(-2)
P 		3945.6
(2)
P 		777
B 4131.6
(2.7)
P 		3616.6
(-3)
P 		3639.3
(-2.7)
P 		4160.6
(3)
P 		544
C 3686.1
(0.8)
P 		3701.3
(0.9)
P 		3117
(-3)
P 		4021.3
(3)
P 		904
avr 3707.3
(-0.1) 		3799.7
(0.7) 		3395.8
(-3) 		4042.5
(3) 		647

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3467
1 2 3 4 5 6 range
A 2701.5
(-3)
P 		3587.6
(-0.1)
P 		4114.8
(1.7)
P 		4524.2
(3)
P 		3336.2
(-0.9)
P 		2871.2
(-2.4)
P 		1823
B 2168
(-3)
P 		3634.6
(-0.2)
P 		5291.5
(3)
P 		4341.6
(1.2)
P 		3326.1
(-0.8)
P 		2898.4
(-1.6)
P 		3124
C 1824.8
(-3)
P 		4003.8
(1.7)
P 		4032
(1.7)
P 		4635.3
(3)
P 		2963.7
(-0.6)
P 		3305.4
(0.2)
P 		2811
avr 2231.4
(-3) 		3742
(1) 		4479.4
(2.9) 		4500.4
(3) 		3208.7
(-0.4) 		3025
(-0.9) 		2269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 740
1 2 3 4 range
A 1203
(3)
P 		885.9
(-0)
P 		896.9
(0.1)
P 		577.6
(-3)
P 		625
B 1317.5
(3)
P 		893.2
(-2.4)
P 		843.3
(-3)
P 		886.6
(-2.5)
P 		474
C 1220.2
(3)
P 		1064.2
(1.3)
P 		1086.4
(1.5)
P 		678.1
(-3)
P 		542
avr 1246.9
(3) 		947.8
(-0.4) 		942.2
(-0.4) 		714.1
(-3) 		533

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 853
1 2 3 4 5 6 range
A 498
(-3)
P 		1275.9
(3)
P 		896.1
(0.1)
P 		1147.4
(2)
P 		1006.7
(0.9)
P 		699
(-1.4)
P 		778
B 754.4
(-3)
P 		1209.8
(1.6)
P 		1284.9
(2.3)
P 		1149.9
(1)
P 		1351.4
(3)
P 		1080.8
(0.3)
P 		597
C 676.4
(-3)
P 		1221.7
(3)
P 		1026.2
(0.8)
P 		932.2
(-0.2)
P 		959
(0.1)
P 		1106.5
(1.7)
P 		545
avr 642.9
(-3) 		1235.8
(3) 		1069.1
(1.3) 		1076.5
(1.4) 		1105.7
(1.7) 		962.1
(0.2) 		593
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177555_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16776
Sequence Type Exemplar sequence
Representative Public ID F09B9.4 NCBI
Target Description F09B9.4 /REP_DB=WormBase Gene ID /WP=CE09275 /TR=Q93195 /GB=CAA90059.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077303(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077303 NCBI Caenorhabditis elegans F09B9.4 (F09B9.4) mRNA, complete cds. 9/11 None
F09B9.4 ENSEMBL cdna:known chromosome:CEL140:X:10160560:10161738:1 gene:F09B9.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044343 7/11 Cross Hyb Matching Probes None
GENEFINDER00000044351 7/11 Cross Hyb Matching Probes None
GENEFINDER00000037103 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10159086-10161530(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09B9.4
Entrez Gene 184221 Entrez gene
SwissProt Q7JMH3 EMBL-EBI
WormBase CE37344 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01718 Hypothetical protein F09B9.4 [Caenorhabditis elegans] emb|CAA90059.3| Hypothetical protein F09B9.4 [Caenorhabditis elegans] ref|NP_509704.3| F09B9.4 [Caenorhabditis elegans] 3.0E-56
blast T19034 hypothetical protein F09B9.4 - Caenorhabditis elegans 2.0E-49
blast CAE70532 Hypothetical protein CBG17163 [Caenorhabditis briggsae] 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:177555_AT
ggagcagctcaatgcgtcattttcattgtcaaaacttataaattgtttcgaaaaaaaaat
agtagggatgaatttcaaacttttattggttttatttctcgcaacatcacttttggtgtc
gatgagcgacgctggtaaagatcgcagaaagaagcaaaagcaaaaggaacgccaagaaga
tgatgacaataatgatgagcccgcaggaggatctgaaatgggagaatcgggaaaagctaa
agatgagaaagagcgaacttcagttcttgaaaagcaagccggaaagaaaggtgatgatga
atcttcatcatccgaagaagataaagaggatgaagacgaaaagaaagataactctactgt
tatcatccgcgaagaaaatgaaatcatcaaggctgaaaaagaattagatgaagaaaaagt
ggaccaattccgacaatccagagtactccgtttcacccgttcagccgacgaggcacgtgt
gctcccaactgatgctgcaaagttcaaacgcgacactatcacccaaacgctgaaatcaaa
agagctgaacgacggagttcaattgccattgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCAGCTCAATGCGTCATTTTCA 594 519 162 Antisense
TTTTATTTCTCGCAACATCACTTTT 610 675 251 Antisense
AATGATGAGCCCGCAGGAGGATCTG 225 165 352 Antisense
ACTCTACTGTTATCATCCGCGAAGA 547 99 512 Antisense
AAGTGGACCAATTCCGACAATCCAG 558 159 578 Antisense
GACAATCCAGAGTACTCCGTTTCAC 359 365 593 Antisense
TTCAGCCGACGAGGCACGTGTGCTC 118 681 621 Antisense
GCTCCCAACTGATGCTGCAAAGTTC 209 299 642 Antisense
AAGTTCAAACGCGACACTATCACCC 111 157 661 Antisense
GACACTATCACCCAAACGCTGAAAT 306 367 673 Antisense
AACGACGGAGTTCAATTGCCATTGG 91 145 709 Antisense
Sequence Source Affymetrix Proprietary Database