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[177554_at]

Description F17B5.3 /REP_DB=WormBase Gene ID /WP=CE15867 /TR=O45375 /GB=CAB02971.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 35.5
(2.7)
A 		36.2
(3)
A 		21.2
(-2.6)
A 		20.1
(-3)
A 		16
B 12.6
(-3)
A 		67.2
(3)
A 		17.4
(-2.5)
A 		18.3
(-2.4)
A 		55
C 21.3
(-3)
A 		30.3
(-0.5)
A 		41.8
(2.8)
A 		42.5
(3)
A 		21
avr 23.1
(-3) 		44.6
(3) 		26.8
(-2) 		27
(-1.9) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 23.6
(-0.4)
A 		46.2
(2.7)
A 		4.9
(-3)
A 		10.9
(-2.2)
A 		48.6
(3)
A 		43.8
(2.3)
A 		44
B 8.8
(-2.1)
A 		10.7
(-1.5)
A 		5.8
(-3)
A 		24.8
(3)
A 		10
(-1.7)
A 		19.4
(1.3)
A 		19
C 25.6
(-0.9)
A 		10.9
(-2.7)
A 		14.2
(-2.3)
A 		56.8
(3)
A 		17.5
(-1.9)
A 		8.7
(-3)
A 		48
avr 19.3
(-0.1) 		22.6
(0.8) 		8.3
(-3) 		30.8
(3) 		25.4
(1.6) 		24
(1.2) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.9
(3)
A 		7.8
(-0.1)
A 		5.5
(-1.4)
A 		2.9
(-3)
A 		10
B 4
(-3)
A 		16.6
(3)
A 		4
(-3)
A 		3.9
(-3)
A 		13
C 7.1
(-3)
A 		8.7
(-1.7)
A 		14.6
(3)
A 		7.2
(-2.9)
A 		8
avr 8
(0.1) 		11
(3) 		8
(0.1) 		4.7
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.4
(-1.7)
A 		16.4
(3)
A 		1.1
(-3)
A 		2.8
(-2.3)
A 		14.7
(2.3)
A 		10.7
(0.8)
A 		15
B 3.1
(-1.3)
A 		3.5
(-0.9)
A 		1.4
(-3)
A 		6.6
(2.3)
A 		4.1
(-0.3)
A 		7.3
(3)
A 		6
C 9.5
(1.7)
A 		3.3
(-2.7)
A 		3.6
(-2.5)
A 		11.4
(3)
A 		5.7
(-1)
A 		2.9
(-3)
A 		9
avr 5.7
(0.6) 		7.7
(2.5) 		2
(-3) 		6.9
(1.7) 		8.2
(3) 		7
(1.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177554_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2204
Sequence Type Exemplar sequence
Representative Public ID F17B5.3 NCBI
Target Description F17B5.3 /REP_DB=WormBase Gene ID /WP=CE15867 /TR=O45375 /GB=CAB02971.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060909(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060909 NCBI Caenorhabditis elegans F17B5.3 (F17B5.3) mRNA, complete cds. 11/11 None
F17B5.3 ENSEMBL cdna:known chromosome:CEL140:I:13205337:13206231:-1 gene:F17B5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002462 8/11 Cross Hyb Matching Probes None
SNAP00000002454 2/11 Cross Hyb Matching Probes None
SNAP00000002455 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13205267-13206162(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17B5.3
Entrez Gene 173183 Entrez gene
SwissProt O45375 EMBL-EBI
WormBase CE15867 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02971 Hypothetical protein F17B5.3 [Caenorhabditis elegans] ref|NP_493310.1| F17B5.3 [Caenorhabditis elegans] 1.0E-111
blast AAF59494 Hypothetical protein Y50D4B.5 [Caenorhabditis elegans] ref|NP_503376.1| Y50D4B.5 [Caenorhabditis elegans] 1.0E-82
blast CAE17978 Hypothetical protein Y18D10A.24 [Caenorhabditis elegans] ref|NP_001021724.1| Y18D10A.24 [Caenorhabditis elegans] 5.0E-44
Sequence
Target Sequence 
>C. ELEGANS:177554_AT
taaacacgttggttcttcgtcttcttattcttcgagttcttctgaagaacgaagtaaacg
taggcataaaaattcacgcctcactcacagttcacgttcacgcccaactcgtacctgtcc
gagagattggatcacttttgagaggcctcaaggcagatggtgtatgaaggcgttctacgg
aaacatgttccaaccagaggccgaggcaaagtgcaacgcagtcggagcaagactctcagg
gcttcagaatgccaatgaaaggatgactatttcttatgtcctccgtggtttgatatacca
gcacggtggtggaaggtacacagcatggctcggcggaaaaagaagagctcgctgcccaac
cggtacctcatgtgcccgactggacagtatcgagtggacagatgggcatacgacgggtac
tgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACACGTTGGTTCTTCGTCTTCT 554 639 108 Antisense
GCATAAAAATTCACGCCTCACTCAC 173 307 171 Antisense
CCCAACTCGTACCTGTCCGAGAGAT 125 259 210 Antisense
GGAAACATGTTCCAACCAGAGGCCG 109 529 286 Antisense
GGCCGAGGCAAAGTGCAACGCAGTC 254 543 306 Antisense
TCGGAGCAAGACTCTCAGGGCTTCA 129 607 329 Antisense
GGATGACTATTTCTTATGTCCTCCG 545 513 368 Antisense
TTATGTCCTCCGTGGTTTGATATAC 246 679 381 Antisense
GTACACAGCATGGCTCGGCGGAAAA 634 459 423 Antisense
GAAAAAGAAGAGCTCGCTGCCCAAC 425 355 443 Antisense
GATGGGCATACGACGGGTACTGCTG 473 407 508 Antisense
Sequence Source Affymetrix Proprietary Database