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[177552_at]

Description F44G4.7 /REP_DB=WormBase Gene ID /WP=CE02234 /TR=Q20417 /GB=CAA90123.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 38      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 194.8
(3)
P 		88.5
(-0.8)
A 		84.7
(-1)
A 		29.1
(-3)
A 		166
B 201.9
(3)
P 		66.9
(-1.9)
A 		36.1
(-3)
A 		106.2
(-0.5)
P 		166
C 217.5
(3)
P 		92.6
(-1.2)
A 		41.1
(-3)
A 		102.5
(-0.9)
P 		176
avr 204.7
(3) 		82.7
(-1.9) 		54
(-3) 		79.3
(-2) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 117.3
(2.6)
P 		123.2
(3)
P 		77.1
(-0.4)
P 		71.9
(-0.8)
A 		59.3
(-1.7)
A 		42.3
(-3)
A 		81
B 142.2
(3)
P 		118.5
(1.5)
P 		45.7
(-3)
A 		86.1
(-0.5)
A 		67.7
(-1.6)
A 		54.5
(-2.5)
A 		97
C 242.8
(3)
P 		137.8
(-0.6)
P 		101.7
(-1.8)
A 		67
(-3)
A 		76
(-2.7)
A 		75.4
(-2.7)
P 		176
avr 167.4
(3) 		126.5
(0.8) 		74.8
(-2.1) 		75
(-2) 		67.7
(-2.4) 		57.4
(-3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 70.9
(3)
P 		19.2
(-1.7)
A 		22.1
(-1.4)
A 		4.3
(-3)
A 		67
B 64.4
(3)
P 		16.5
(-2.1)
A 		8.4
(-3)
A 		22.6
(-1.5)
P 		56
C 72
(3)
P 		26.6
(-1.7)
A 		14.3
(-3)
A 		17.3
(-2.7)
P 		58
avr 69.1
(3) 		20.8
(-2.3) 		14.9
(-3) 		14.7
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 21.6
(-1)
P 		43.8
(3)
P 		16.8
(-1.8)
P 		18.2
(-1.6)
A 		17.9
(-1.6)
A 		10.3
(-3)
A 		34
B 49.5
(3)
P 		39.4
(1.4)
P 		11.1
(-3)
A 		22.8
(-1.2)
A 		27.5
(-0.4)
A 		20.3
(-1.6)
A 		38
C 90
(3)
P 		42
(-0.8)
P 		25.9
(-2)
A 		13.5
(-3)
A 		24.6
(-2.1)
A 		25.2
(-2.1)
P 		77
avr 53.7
(3) 		41.7
(1) 		17.9
(-3) 		18.2
(-2.9) 		23.3
(-2.1) 		18.6
(-2.9) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177552_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3618
Sequence Type Exemplar sequence
Representative Public ID F44G4.7 NCBI
Target Description F44G4.7 /REP_DB=WormBase Gene ID /WP=CE02234 /TR=Q20417 /GB=CAA90123.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063523(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063523 NCBI Caenorhabditis elegans F44G4.7 (F44G4.7) mRNA, complete cds. 10/11 None
SNAP00000000994 ENSEMBL cdna:SNAP chromosome:CEL140:II:9002507:9004976:-1 10/11 None
GENEFINDER00000001000 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9002507:9004976:-1 10/11 None
F44G4.7 ENSEMBL cdna:known chromosome:CEL140:II:9002507:9004976:-1 gene:F44G4.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9003016-9003863(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44G4.7
Entrez Gene 185763 Entrez gene
SwissProt Q20417 EMBL-EBI
WormBase CE37837 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90123 Hypothetical protein F44G4.7 [Caenorhabditis elegans] ref|NP_495924.2| F44G4.7 [Caenorhabditis elegans] 0.0
blast CAE59786 Hypothetical protein CBG03238 [Caenorhabditis briggsae] 1.0E-157
blast CAA90123 Hypothetical protein F44G4.7 [Caenorhabditis elegans] ref|NP_495924.2| F44G4.7 [Caenorhabditis elegans] 1.0E-153
blast CAE59786 Hypothetical protein CBG03238 [Caenorhabditis briggsae] 1.0E-102
Sequence
Target Sequence 
>C. ELEGANS:177552_AT
atattctcaagatcaccaccatagtggatttctttcaatagctactgttctgtcctcaat
tcgaactattcatccctctgacacgtggcaaaatctgtttgattggttgattgcaacagg
tcttgactcagatggttatccagaacttgcaccaccgtcatctccaaatatcagctactt
ggtagactatcaaatgttctttgatgttctgctaaacgataaacaggcaagagaagtctt
agttaatattccagaagttctagattctgatgatggtggaagtgtattctctcatctgcc
aagtaggccaacgtcaagtcaagaacaaagagagaaatggagggttaagctactcatcga
tcttgaaatgattctctctttacatccagacattgacatcgaaaggtttaagttagcaac
cgataaaaaggttatattaattctgagccacattcccacaattctcaaatttcagataat
caccgtggaagaactgaaaatgctcttccaaatctacgggctcgcggagcacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTCTCAAGATCACCACCATAGT 302 19 141 Antisense
TCAATAGCTACTGTTCTGTCCTCAA 472 633 175 Antisense
CAATTCGAACTATTCATCCCTCTGA 45 181 197 Antisense
TGGTTATCCAGAACTTGCACCACCG 673 551 273 Antisense
CCACCGTCATCTCCAAATATCAGCT 30 275 292 Antisense
GTGGAAGTGTATTCTCTCATCTGCC 368 491 416 Antisense
TGCCAAGTAGGCCAACGTCAAGTCA 258 585 437 Antisense
GGGTTAAGCTACTCATCGATCTTGA 224 497 482 Antisense
GATTCTCTCTTTACATCCAGACATT 15 433 510 Antisense
TATTAATTCTGAGCCACATTCCCAC 375 663 575 Antisense
AATCTACGGGCTCGCGGAGCACATT 565 169 651 Antisense
Sequence Source Affymetrix Proprietary Database