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[177551_at]

Description F56F3.3 /REP_DB=WormBase Gene ID /WP=CE00678 /TR=Q20897 /GB=CAA83604.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 31.6
(1.2)
A 		8.3
(-3)
A 		41.9
(3)
A 		23
(-0.4)
A 		34
B 41.2
(0.7)
A 		53.1
(3)
A 		43.7
(1.2)
A 		21.8
(-3)
A 		31
C 59.9
(3)
A 		7.7
(-3)
A 		26.7
(-0.8)
A 		9.7
(-2.8)
A 		52
avr 44.2
(3) 		23
(-1.9) 		37.4
(1.4) 		18.2
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 4.7
(-3)
A 		31.8
(1.9)
A 		18.5
(-0.5)
A 		37.9
(3)
A 		36.9
(2.8)
A 		13.2
(-1.5)
A 		33
B 38.6
(3)
A 		36.5
(2.7)
A 		36.6
(2.7)
A 		12.8
(-1.3)
A 		21.5
(0.2)
A 		2.5
(-3)
A 		36
C 21.6
(-1.8)
A 		34.4
(-0.9)
A 		38.7
(-0.5)
A 		88
(3)
P 		33.3
(-0.9)
A 		4.6
(-3)
A 		83
avr 21.6
(-0.7) 		34.2
(1.2) 		31.3
(0.7) 		46.2
(3) 		30.6
(0.6) 		6.8
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11.5
(3)
A 		1.8
(-3)
A 		11
(2.7)
A 		3.4
(-2)
A 		10
B 13.1
(3)
A 		13.1
(3)
A 		10.1
(0.9)
A 		4.6
(-3)
A 		9
C 19.8
(3)
A 		2.2
(-2.8)
A 		9.3
(-0.5)
A 		1.6
(-3)
A 		18
avr 14.8
(3) 		5.7
(-1.7) 		10.1
(0.6) 		3.2
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.9
(-3)
A 		11.3
(3)
A 		4
(-1.2)
A 		9.6
(2)
A 		11.1
(2.9)
A 		3.2
(-1.7)
A 		10
B 13.4
(3)
A 		12.2
(2.4)
A 		8.9
(0.8)
A 		3.4
(-1.8)
A 		8.8
(0.8)
A 		0.9
(-3)
A 		13
C 8
(-0.6)
A 		10.5
(0.3)
A 		9.9
(0.1)
A 		17.7
(3)
P 		10.8
(0.4)
A 		1.5
(-3)
A 		16
avr 7.4
(0.5) 		11.3
(3) 		7.6
(0.6) 		10.2
(2.3) 		10.2
(2.3) 		1.9
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177551_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6711
Sequence Type Exemplar sequence
Representative Public ID F56F3.3 NCBI
Target Description F56F3.3 /REP_DB=WormBase Gene ID /WP=CE00678 /TR=Q20897 /GB=CAA83604.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065505(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065505 NCBI Caenorhabditis elegans F56F3.3 (F56F3.3) mRNA, complete cds. 11/11 None
F56F3.3 ENSEMBL cdna:known chromosome:CEL140:III:4458445:4459428:-1 gene:F56F3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4458444-4459428(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56F3.3
Entrez Gene 186394 Entrez gene
SwissProt Q20897 EMBL-EBI
WormBase CE00678 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83604 Hypothetical protein F56F3.3 [Caenorhabditis elegans] ref|NP_497906.1| F56F3.3 [Caenorhabditis elegans] 2.0E-63
Sequence
Target Sequence 
>C. ELEGANS:177551_AT
gcaccagcgggtggcaggagagggagaaatgtatacagcacgctcgattgaacgcgctcc
tttttggaaggtaagaaaattggtggattacgaccgccggtcttctccttcttcctgttt
cagttggctcatcttctcctgtcacctgctccggcggtcatgtagatgttttcaaatgaa
acgatgcaggtgtgagcacactttttcgggtggcggaaacggaagagtagctggagatga
gacgatcgtaggagacaatatccccctcacctgttgcaaattttcagacgttttaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACCAGCGGGTGGCAGGAGAGGGA 263 315 18 Antisense
ACAGCACGCTCGATTGAACGCGCTC 514 107 52 Antisense
GAAAATTGGTGGATTACGACCGCCG 359 287 92 Antisense
CTTCTTCCTGTTTCAGTTGGCTCAT 400 221 125 Antisense
CTGCTCCGGCGGTCATGTAGATGTT 557 237 163 Antisense
GAAACGATGCAGGTGTGAGCACACT 434 357 195 Antisense
TGTGAGCACACTTTTTCGGGTGGCG 148 553 208 Antisense
GTAGCTGGAGATGAGACGATCGTAG 485 457 244 Antisense
TCGTAGGAGACAATATCCCCCTCAC 308 603 263 Antisense
CCCCTCACCTGTTGCAAATTTTCAG 654 261 280 Antisense
TGCAAATTTTCAGACGTTTTACCGA 313 573 292 Antisense
Sequence Source Affymetrix Proprietary Database