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[177550_at] 7TM chemoreceptor, srw family

Description F49H6.7 /REP_DB=WormBase Gene ID /WP=CE18716 /TR=Q9XV03 /GB=CAB04441.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 35      6grp_cgc > 43      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 13.9
(-2.4)
A 		36.5
(3)
A 		11.4
(-3)
A 		14.9
(-2.2)
A 		25
B 12.9
(-1.3)
A 		18.1
(3)
A 		10.9
(-3)
A 		17.8
(2.8)
A 		7
C 38.2
(-0.8)
A 		94.7
(3)
A 		5
(-3)
A 		39.8
(-0.7)
A 		90
avr 21.7
(-1.1) 		49.8
(3) 		9.1
(-3) 		24.2
(-0.8) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 26.5
(-0.8)
A 		29.5
(-0.4)
A 		55.7
(3)
A 		9.4
(-3)
A 		47.9
(2)
A 		20.1
(-1.6)
A 		46
B 39.4
(0)
A 		63.9
(3)
A 		14.9
(-3)
A 		21
(-2.3)
A 		21.3
(-2.2)
A 		45.7
(0.8)
A 		49
C 49.4
(1)
A 		61
(3)
A 		25.9
(-3)
A 		47.9
(0.8)
A 		38.7
(-0.8)
A 		30.1
(-2.3)
A 		35
avr 38.4
(-0.1) 		51.5
(3) 		32.2
(-1.6) 		26.1
(-3) 		36
(-0.7) 		32
(-1.6) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 5
(-0.1)
A 		7.9
(3)
A 		3
(-2.2)
A 		2.2
(-3)
A 		6
B 4.1
(1.8)
A 		4.5
(3)
A 		2.5
(-3)
A 		3.8
(0.9)
A 		2
C 12.6
(-0.4)
A 		27.2
(3)
A 		1.7
(-3)
A 		6.7
(-1.8)
A 		26
avr 7.2
(-0.3) 		13.2
(3) 		2.4
(-3) 		4.2
(-2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.9
(-1.8)
A 		10.5
(1)
A 		12.1
(1.8)
A 		2.4
(-3)
A 		14.5
(3)
A 		4.9
(-1.8)
A 		12
B 13.7
(0.4)
A 		21.3
(3)
A 		3.6
(-3)
A 		5.6
(-2.3)
A 		8.7
(-1.3)
A 		17
(1.5)
A 		18
C 18.3
(2.9)
A 		18.6
(3)
A 		6.6
(-3)
A 		9.6
(-1.5)
A 		12.5
(-0.1)
A 		10.1
(-1.3)
A 		12
avr 12.3
(0.5) 		16.8
(3) 		7.4
(-2.2) 		5.9
(-3) 		11.9
(0.3) 		10.7
(-0.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13216
Sequence Type Exemplar sequence
Representative Public ID F49H6.7 NCBI
Target Description F49H6.7 /REP_DB=WormBase Gene ID /WP=CE18716 /TR=Q9XV03 /GB=CAB04441.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074911 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-37) (srw-37) mRNA, complete cds. 11/11 None
GENEFINDER00000000014 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17030257:17033018:1 11/11 None
F49H6.7 ENSEMBL cdna:known chromosome:CEL140:V:17031650:17033026:1 gene:F49H6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17031649-17033026(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-37
Ensembl F49H6.7
Entrez Gene 186074 Entrez gene
SwissProt Q9XV03 EMBL-EBI
WormBase CE18716 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04441 Hypothetical protein F49H6.7 [Caenorhabditis elegans] ref|NP_507312.1| Serpentine Receptor, class W family member (srw-37) [Caenorhabditis elegans] 1.0E-140
blast CAB04441 Hypothetical protein F49H6.7 [Caenorhabditis elegans] ref|NP_507312.1| Serpentine Receptor, class W family member (srw-37) [Caenorhabditis elegans] 1.0E-117
blast CAC14392 Hypothetical protein Y116F11B.5 [Caenorhabditis elegans] ref|NP_507842.1| Serpentine Receptor, class W family member (srw-38) [Caenorhabditis elegans] 5.0E-60
blast CAC14392 Hypothetical protein Y116F11B.5 [Caenorhabditis elegans] ref|NP_507842.1| Serpentine Receptor, class W family member (srw-38) [Caenorhabditis elegans] 3.0E-50
blast CAB07191 Hypothetical protein F14F8.7 [Caenorhabditis elegans] ref|NP_507224.1| Serpentine Receptor, class W family member (srw-36) [Caenorhabditis elegans] 1.0E-41
blast CAB07191 Hypothetical protein F14F8.7 [Caenorhabditis elegans] ref|NP_507224.1| Serpentine Receptor, class W family member (srw-36) [Caenorhabditis elegans] 8.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.2E-31
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.2E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507312.1 6 13-32,54-76,88-110,163-185,206-228,238-260
F49H6.7 6 13-32,54-76,88-110,163-185,206-228,238-260
GENEFINDER00000000014 7 39-61,85-104,119-138,150-172,225-247,268-290,300-322
Sequence
Target Sequence 
>C. ELEGANS:177550_AT
actggcgcaacgcacaagacgcctcatctactcaaaaattggcataaaaatccttctaac
cattatagttctcattttgcccttctcattgattcaactctctcgatcagaaattattcc
agcaggagtctgggctcccgcttcaaattgcgatggatttcctgaaaactacaccgaaaa
atttttccaatttgtggaaactggcatacttagtgacgccgagttttattggatcaacgt
ttacacagaatccgtcatttttgaaattattccgtcgatatcaatccctcttacaactat
tttgttaatttcggagttaagaaaaagcaggaacatgacgagtaaacatcaggaaaatag
atctacaaaacttgtgacatggatgacgatatttttcacattggcaaatgcaccttatgg
tttggcatatagcatctctttttggttttcaaattacataacaatgctaatggcacaaat
aacaatgctcgcgtctattctatcaactctcaatagtgcttcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGGCGCAACGCACAAGACGCCTC 671 95 249 Antisense
AAGACGCCTCATCTACTCAAAAATT 47 155 264 Antisense
ATTATAGTTCTCATTTTGCCCTTCT 528 13 310 Antisense
TTTTGCCCTTCTCATTGATTCAACT 200 677 323 Antisense
TATTCCAGCAGGAGTCTGGGCTCCC 42 665 363 Antisense
GCTCCCGCTTCAAATTGCGATGGAT 427 299 382 Antisense
TTATTCCGTCGATATCAATCCCTCT 23 677 515 Antisense
ATCAATCCCTCTTACAACTATTTTG 695 25 528 Antisense
GGCATATAGCATCTCTTTTTGGTTT 287 535 672 Antisense
ATAACAATGCTCGCGTCTATTCTAT 448 25 727 Antisense
ATCAACTCTCAATAGTGCTTCCCAT 407 27 750 Antisense
Sequence Source Affymetrix Proprietary Database