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[177549_s_at]

Description C09F9.4 /REP_DB=WormBase Gene ID /WP=CE17395 /TR=Q9U3Q4 /GB=CAB03860.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 83.5
(-2.4)
A 		143.7
(3)
P 		77.3
(-3)
P 		89.2
(-1.9)
A 		66
B 69.4
(-1.9)
A 		123.8
(3)
P 		123.6
(3)
P 		57.1
(-3)
A 		67
C 72.9
(-3)
P 		126.7
(3)
P 		114
(1.6)
P 		84.9
(-1.7)
A 		54
avr 75.3
(-3) 		131.4
(3) 		105
(0.2) 		77.1
(-2.8) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 73.9
(3)
A 		54.9
(-0.2)
M 		40.4
(-2.6)
A 		59.7
(0.6)
A 		59.7
(0.6)
A 		38.2
(-3)
A 		36
B 93.2
(3)
P 		59.2
(-0.4)
A 		53.8
(-0.9)
A 		49.5
(-1.3)
M 		43.6
(-1.9)
A 		32.6
(-3)
A 		61
C 112.1
(3)
P 		22.9
(-2.8)
A 		19.1
(-3)
A 		81.2
(1)
A 		51.4
(-0.9)
A 		27.2
(-2.5)
A 		93
avr 93.1
(3) 		45.7
(-1.7) 		37.8
(-2.5) 		63.5
(0.1) 		51.6
(-1.1) 		32.7
(-3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 30.4
(2.7)
A 		31.2
(3)
P 		20.2
(-0.6)
P 		13.1
(-3)
A 		18
B 22.1
(0.2)
A 		30.6
(3)
P 		28.6
(2.3)
P 		12.2
(-3)
A 		18
C 24.1
(-0.7)
P 		36.4
(2.2)
P 		39.7
(3)
P 		14.3
(-3)
A 		25
avr 25.5
(0.8) 		32.7
(3) 		29.5
(2) 		13.2
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 13.6
(-0.3)
A 		19.5
(3)
M 		8.8
(-3)
A 		15.1
(0.5)
A 		18
(2.2)
A 		9.3
(-2.7)
A 		11
B 32.4
(3)
P 		19.7
(-0.8)
A 		13.1
(-2.7)
A 		13.1
(-2.7)
M 		17.7
(-1.3)
A 		12.1
(-3)
A 		20
C 41.6
(3)
P 		7
(-2.7)
A 		4.9
(-3)
A 		16.3
(-1.1)
A 		16.6
(-1.1)
A 		9.1
(-2.3)
A 		37
avr 29.2
(3) 		15.4
(-1.1) 		8.9
(-3) 		14.8
(-1.3) 		17.4
(-0.5) 		10.2
(-2.6) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177549_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3535
Sequence Type Exemplar sequence
Representative Public ID C09F9.4 NCBI
Target Description C09F9.4 /REP_DB=WormBase Gene ID /WP=CE17395 /TR=Q9U3Q4 /GB=CAB03860.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064652(11), NM_064655(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064652 NCBI Caenorhabditis elegans C09F9.2 (C09F9.2) mRNA, complete cds. 11/11 None
NM_064655 NCBI Caenorhabditis elegans C09F9.4 (C09F9.4) mRNA, complete cds. 11/11 None
SNAP00000033573 ENSEMBL cdna:SNAP chromosome:CEL140:II:14705276:14712491:1 11/11 None
SNAP00000033574 ENSEMBL cdna:SNAP chromosome:CEL140:II:14714031:14719561:1 11/11 None
GENEFINDER00000033580 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14718253:14719561:1 11/11 None
GENEFINDER00000033583 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14705407:14712491:1 11/11 None
C09F9.2 ENSEMBL cdna:known chromosome:CEL140:II:14705407:14712491:1 gene:C09F9.2 11/11 None
C09F9.4 ENSEMBL cdna:known chromosome:CEL140:II:14718253:14719561:1 gene:C09F9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14718249-14719558(+) 100.0 100.0
chrII:14711179-14712488(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl C09F9.2
C09F9.4
Entrez Gene 182456 Entrez gene
182457 Entrez gene
SwissProt O62055 EMBL-EBI
Q9U3Q4 EMBL-EBI
WormBase CE17393 Wormbase
CE17395 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1630476_S_AT nahoda dm
DROSGENOME1:151996_AT nahoda dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6584 catecholamine metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4500 dopamine beta-monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03861 Hypothetical protein C09F9.2 [Caenorhabditis elegans] ref|NP_497053.1| C09F9.2 [Caenorhabditis elegans] 0.0
blast CAE60622 Hypothetical protein CBG04265 [Caenorhabditis briggsae] 0.0
blast CAB03861 Hypothetical protein C09F9.2 [Caenorhabditis elegans] ref|NP_497053.1| C09F9.2 [Caenorhabditis elegans] 1.0E-144
blast CAB03860 Hypothetical protein C09F9.4 [Caenorhabditis elegans] ref|NP_497056.1| C09F9.4 [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 9.8E-22
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.7E-26
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.4E-17
Pfam IPR000082 EMBL-EBI SEA domain 4.3E-4
Pfam IPR005018 EMBL-EBI DOMON domain 4.0E-41
Pfam IPR005018 EMBL-EBI DOMON domain 1.8E-44
Pfam IPR005018 EMBL-EBI DOMON domain 2.6E-32
Pfam IPR005018 EMBL-EBI DOMON domain 1.4E-39
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 9.8E-22
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.7E-26
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.4E-17
Pfam IPR000082 EMBL-EBI SEA domain 4.3E-4
Pfam IPR005018 EMBL-EBI DOMON domain 4.0E-41
Pfam IPR005018 EMBL-EBI DOMON domain 1.8E-44
Pfam IPR005018 EMBL-EBI DOMON domain 2.6E-32
Pfam IPR005018 EMBL-EBI DOMON domain 1.4E-39
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 9.8E-22
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.7E-26
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.4E-17
Pfam IPR000082 EMBL-EBI SEA domain 4.3E-4
Pfam IPR005018 EMBL-EBI DOMON domain 4.0E-41
Pfam IPR005018 EMBL-EBI DOMON domain 1.8E-44
Pfam IPR005018 EMBL-EBI DOMON domain 2.6E-32
Pfam IPR005018 EMBL-EBI DOMON domain 1.4E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497053.1 1 1470-1492
NP_497056.1 1 81-103
C09F9.2 1 1470-1492
C09F9.4 1 81-103
SNAP00000033573 1 1486-1508
SNAP00000033574 1 137-159
GENEFINDER00000033580 1 81-103
GENEFINDER00000033583 1 1504-1526
Sequence
Target Sequence 
>C. ELEGANS:177549_S_AT
ttctctatcgagccatcaaccgttaaagtcactgaggtcgataccaccactgctccatcc
aatgaggaaactctcacagattggcgaatgtggcgcaacatcgtcgtcatcgctggttgc
tcagtggctactgctattgctgtattatgcatttgctacatgtgttgctcaaaatgcaaa
aagaggacctataccgcctacccagtcgccgatcatcacatgtcgtacgccagtagaatg
ttaaacgagaaaggaggattcgacaatgccatctaccaccaaccacagcgattctattcc
caaacgacggtcgcatcgaccaaagtaacatcggcctctgctgctcacggtgccgaccca
aatggaaatattgaaggaccaccaggaggtgttggagagactacttacgccgagtggtat
tctaaggtcggatcaaagcccgcatcccaacaacacgaagaagtcccaccacaacaacag
cagccaccagtccagtcccgaccaccatccacgacgccatacgtgtcatatcccaacgat
ccgacaggctactacacgttgggcggccgtcatcggcagaactcggcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCTATCGAGCCATCAACCGTTA 649 689 154 Antisense
AAGTCACTGAGGTCGATACCACCAC 414 157 179 Antisense
GTTGCTCAGTGGCTACTGCTATTGC 5 441 269 Antisense
TCGCCGATCATCACATGTCGTACGC 585 599 359 Antisense
GAGGATTCGACAATGCCATCTACCA 455 401 407 Antisense
GATTCTATTCCCAAACGACGGTCGC 101 429 443 Antisense
GAGACTACTTACGCCGAGTGGTATT 707 389 550 Antisense
CCATCCACGACGCCATACGTGTCAT 687 271 658 Antisense
TACGTGTCATATCCCAACGATCCGA 524 647 673 Antisense
TCCGACAGGCTACTACACGTTGGGC 508 595 693 Antisense
GGCCGTCATCGGCAGAACTCGGCGA 696 541 718 Antisense
Sequence Source Affymetrix Proprietary Database