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[177544_at]

Description F58E6.7 /REP_DB=WormBase Gene ID /WP=CE06022 /TR=Q20983 /GB=CAA94777.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 45      6grp_total > 17      4grp_total > 50      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 43
(-3)
P 		206.7
(3)
P 		159.9
(1.3)
P 		42.4
(-3)
A 		164
B 48.7
(-2.1)
P 		257.7
(3)
P 		183.7
(1.2)
P 		10.2
(-3)
A 		248
C 57.6
(-2.6)
P 		257.7
(3)
P 		215.9
(1.8)
P 		42.3
(-3)
P 		215
avr 49.8
(-2.5) 		240.7
(3) 		186.5
(1.4) 		31.6
(-3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 47.5
(3)
A 		12.5
(-1.5)
A 		15.6
(-1.1)
A 		23.7
(-0.1)
A 		15.4
(-1.1)
A 		0.8
(-3)
A 		47
B 73.9
(3)
P 		33
(-0.4)
A 		2.2
(-3)
A 		1.7
(-3)
A 		9.5
(-2.4)
A 		29.6
(-0.7)
A 		72
C 62.8
(3)
P 		28.4
(-0.3)
A 		1.6
(-2.9)
A 		9.9
(-2.1)
A 		2.9
(-2.8)
A 		0.9
(-3)
A 		62
avr 61.4
(3) 		24.6
(-1) 		6.5
(-3) 		11.8
(-2.4) 		9.3
(-2.7) 		10.4
(-2.6) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 15.7
(-1.5)
P 		44.9
(3)
P 		41.8
(2.5)
P 		6.2
(-3)
A 		39
B 15.5
(-1.7)
P 		63.6
(3)
P 		42.6
(0.9)
P 		2.2
(-3)
A 		61
C 19.1
(-1.9)
P 		74.1
(2.9)
P 		75.2
(3)
P 		7.1
(-3)
P 		68
avr 16.8
(-1.8) 		60.9
(3) 		53.2
(2.2) 		5.2
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 8.8
(3)
A 		4.4
(-0.1)
A 		3.4
(-0.8)
A 		6
(1)
A 		4.7
(0.1)
A 		0.2
(-3)
A 		9
B 25.7
(3)
P 		11
(-0.5)
A 		0.5
(-3)
A 		0.4
(-3)
A 		3.9
(-2.2)
A 		11
(-0.5)
A 		25
C 23.3
(3)
P 		8.7
(-0.8)
A 		0.4
(-3)
A 		2
(-2.6)
A 		0.9
(-2.8)
A 		0.3
(-3)
A 		23
avr 19.3
(3) 		8
(-0.8) 		1.4
(-3) 		2.8
(-2.5) 		3.2
(-2.4) 		3.8
(-2.2) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177544_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11918
Sequence Type Exemplar sequence
Representative Public ID F58E6.7 NCBI
Target Description F58E6.7 /REP_DB=WormBase Gene ID /WP=CE06022 /TR=Q20983 /GB=CAA94777.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073117
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F58E6.7 ENSEMBL cdna:known chromosome:CEL140:V:9759132:9760144:1 gene:F58E6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073117 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9759131-9759741(+) 100.0 100.0
Public Domain and Genome References
Ensembl F58E6.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94777 Hypothetical protein F58E6.7 [Caenorhabditis elegans] ref|NP_505518.2| F58E6.7 [Caenorhabditis elegans] 8.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
F58E6.7 2 7-29,53-75
Sequence
Target Sequence 
>C. ELEGANS:177544_AT
atggtcaatttcacaaggtcttgtagtcttttaatcatacttcttttcatatttttgatt
tccaatgtggaacttcggccggttatgaaaagtggatattctaagaatcatcatcttttc
cgtccaaaaaatttgcaaactgattcagaagaaggtttttggaataatgtttatttcgtg
atcactgcgagtgactcgttttttggtcttctgcgattttttctcgattcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTCAATTTCACAAGGTCTTGTA 31 51 13 Antisense
CACAAGGTCTTGTAGTCTTTTAATC 111 193 24 Antisense
GTCTTTTAATCATACTTCTTTTCAT 453 469 38 Antisense
GATTTCCAATGTGGAACTTCGGCCG 687 427 69 Antisense
TGGAACTTCGGCCGGTTATGAAAAG 481 547 80 Antisense
AAGAATCATCATCTTTTCCGTCCAA 330 149 115 Antisense
ATAATGTTTATTTCGTGATCACTGC 687 25 176 Antisense
TCGTGATCACTGCGAGTGACTCGTT 657 603 188 Antisense
GAGTGACTCGTTTTTTGGTCTTCTG 68 401 201 Antisense
TTTTGGTCTTCTGCGATTTTTTCTC 285 679 213 Antisense
TCTGCGATTTTTTCTCGATTCGAGA 373 609 222 Antisense
Sequence Source Affymetrix Proprietary Database