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[177543_s_at]

Description F13A7.1 /REP_DB=WormBase Gene ID /WP=CE15808 /TR=O17799 /GB=CAB07573.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 44      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 43.3
(1.7)
A 		20.9
(-1.3)
A 		52.9
(3)
A 		8
(-3)
A 		45
B 30.9
(-0.6)
A 		65.7
(3)
A 		13
(-2.5)
A 		7.7
(-3)
A 		58
C 63.7
(3)
A 		61.9
(2.8)
A 		18.5
(-3)
A 		44.5
(0.5)
A 		45
avr 46
(2.3) 		49.5
(3) 		28.1
(-1.4) 		20.1
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 34.6
(-2.3)
A 		18.3
(-3)
A 		54.7
(-1.4)
A 		21.6
(-2.9)
A 		103.2
(0.6)
A 		158.9
(3)
M 		141
B 45.8
(-1.8)
A 		17.1
(-2.9)
A 		14.2
(-3)
A 		71.3
(-0.8)
A 		137.9
(1.8)
P 		167.9
(3)
P 		154
C 25.3
(-2.8)
A 		20.5
(-3)
A 		24.2
(-2.8)
A 		47
(-1.8)
A 		130.9
(1.9)
P 		155.4
(3)
P 		135
avr 35.2
(-2.3) 		18.6
(-3) 		31
(-2.5) 		46.6
(-1.8) 		124
(1.5) 		160.7
(3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 15.8
(3)
A 		4.5
(-1.6)
A 		13.8
(2.2)
A 		1.2
(-3)
A 		15
B 9.8
(0.4)
A 		16.2
(3)
A 		3
(-2.4)
A 		1.6
(-3)
A 		15
C 21.1
(3)
A 		17.8
(1.7)
A 		6.4
(-3)
A 		7.5
(-2.6)
A 		15
avr 15.6
(3) 		12.8
(1.6) 		7.7
(-0.9) 		3.4
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 6.4
(-2.8)
A 		6.5
(-2.8)
A 		11.9
(-1.8)
A 		5.5
(-3)
A 		31.1
(1.6)
A 		38.7
(3)
M 		33
B 16
(-1.7)
A 		5.7
(-2.8)
A 		3.4
(-3)
A 		18.9
(-1.4)
A 		56
(2.3)
P 		62.6
(3)
P 		59
C 9.4
(-2.6)
A 		6.2
(-3)
A 		6.2
(-3)
A 		9.5
(-2.6)
A 		42.4
(1.7)
P 		52
(3)
P 		46
avr 10.6
(-2.4) 		6.1
(-3) 		7.2
(-2.9) 		11.3
(-2.3) 		43.2
(1.9) 		51.1
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177543_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13799
Sequence Type Exemplar sequence
Representative Public ID F13A7.1 NCBI
Target Description F13A7.1 /REP_DB=WormBase Gene ID /WP=CE15808 /TR=O17799 /GB=CAB07573.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074735(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074735 NCBI Caenorhabditis elegans F13A7.1 (F13A7.1) mRNA, complete cds. 11/11 None
SNAP00000025220 ENSEMBL cdna:SNAP chromosome:CEL140:V:16378892:16380484:-1 11/11 None
GENEFINDER00000025241 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16377668:16381260:-1 11/11 None
F13A7.1 ENSEMBL cdna:known chromosome:CEL140:V:16378888:16380508:-1 gene:F13A7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16378891-16380484(-) 94.23 100.0
Public Domain and Genome References
Gene Title
Ensembl F13A7.1
Entrez Gene 180101 Entrez gene
SwissProt O17799 EMBL-EBI
WormBase CE15808 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07573 Hypothetical protein F13A7.1 [Caenorhabditis elegans] ref|NP_507136.1| F13A7.1 [Caenorhabditis elegans] 5.0E-66
blast CAB07573 Hypothetical protein F13A7.1 [Caenorhabditis elegans] ref|NP_507136.1| F13A7.1 [Caenorhabditis elegans] 3.0E-63
blast CAB07573 Hypothetical protein F13A7.1 [Caenorhabditis elegans] ref|NP_507136.1| F13A7.1 [Caenorhabditis elegans] 7.0E-59
blast CAE56171 Hypothetical protein CBG23791 [Caenorhabditis briggsae] 1.0E-42
blast CAE56171 Hypothetical protein CBG23791 [Caenorhabditis briggsae] 9.0E-40
blast CAE56171 Hypothetical protein CBG23791 [Caenorhabditis briggsae] 2.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 7.4E-19
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.4E-15
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.9E-19
Sequence
Target Sequence 
>C. ELEGANS:177543_S_AT
caagggtcggctgttcaaggtgctggtggtggcggtggtggtgcttctgctggtggtggt
gctgctggtgctggtggagcttctcaaatgacggctgcccagggatcagctgctcaggga
gcaggtggcggaggagctgtttctcagatatctgctgctccgggatctatggctcaagga
gttggtgctccaggatcggctgctcagggaggaggagctcaaggacccgtctctcagata
tctgtgactcagggaggacgtggtggaggcactgcaggcactggttccgtggctcaaggt
gtgactgctcaaggatctgctgctcagggaggaggtggtggaggaactgcaggatctggc
tccgttgctcaaggctctgctgctcaagggtccgctgctcaaggatctgctgctcaggga
ggcggtgtcgctaaatcatcatctgttgccggcggtatgaataatgcccaggcaccagcc
ggttcagcagcttcaagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGGGTCGGCTGTTCAAGGTGCTG 657 181 421 Antisense
GGAGCTTCTCAAATGACGGCTGCCC 578 519 496 Antisense
TGCCCAGGGATCAGCTGCTCAGGGA 171 585 516 Antisense
GTGGCGGAGGAGCTGTTTCTCAGAT 294 491 545 Antisense
TGCTCCGGGATCTATGGCTCAAGGA 113 563 576 Antisense
TCCAGGATCGGCTGCTCAGGGAGGA 89 591 609 Antisense
GACCCGTCTCTCAGATATCTGTGAC 251 381 644 Antisense
TGTGACTGCTCAAGGATCTGCTGCT 471 555 720 Antisense
TGCTCAAGGATCTGCTGCTCAGGGA 137 581 816 Antisense
CGCTAAATCATCATCTGTTGCCGGC 537 253 849 Antisense
CAGCCGGTTCAGCAGCTTCAAGAGC 600 201 896 Antisense
Sequence Source Affymetrix Proprietary Database