[Home] | [Total List]

[177542_at]

Description F46B6.9 /REP_DB=WormBase Gene ID /WP=CE26975 /TR=Q20450 /GB=CAA94825.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 24      4grp_high_8_8 > 27      6grp_total > 12      4grp_total > 37      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 175.1
(2.1)
P 		190.3
(3)
P 		83.5
(-3)
A 		158.2
(1.2)
P 		107
B 212.1
(2.6)
P 		222.5
(3)
P 		60.5
(-3)
A 		162.2
(0.8)
P 		162
C 217
(3)
P 		129.6
(-3)
P 		132.3
(-2.8)
P 		202.6
(2)
P 		87
avr 201.4
(3) 		180.8
(1.9) 		92.1
(-3) 		174.3
(1.5) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 140.5
(-0.7)
P 		242.7
(3)
P 		159.7
(-0)
P 		152.9
(-0.3)
A 		146.7
(-0.5)
P 		77.8
(-3)
A 		165
B 205.7
(3)
P 		170.6
(1.3)
P 		154.9
(0.5)
P 		118.7
(-1.3)
P 		128.4
(-0.8)
P 		83.2
(-3)
P 		123
C 193.8
(-0.4)
P 		327.7
(3)
P 		106.5
(-2.7)
P 		170.6
(-1)
A 		112.2
(-2.5)
P 		94
(-3)
A 		234
avr 180
(0.5) 		247
(3) 		140.4
(-0.9) 		147.4
(-0.7) 		129.1
(-1.4) 		85
(-3) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 63.7
(3)
P 		41.3
(-0.2)
P 		21.8
(-3)
A 		23.2
(-2.8)
P 		42
B 67.6
(3)
P 		54.9
(1.6)
P 		14
(-3)
A 		34.6
(-0.7)
P 		54
C 71.8
(3)
P 		37.2
(-2.5)
P 		46.1
(-1.1)
P 		34.2
(-3)
P 		38
avr 67.7
(3) 		44.5
(-0.4) 		27.3
(-3) 		30.7
(-2.5) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 25.9
(-2.4)
P 		86.3
(3)
P 		34.8
(-1.6)
P 		38.8
(-1.2)
A 		44.3
(-0.7)
P 		18.9
(-3)
A 		67
B 71.6
(3)
P 		56.8
(0.8)
P 		37.6
(-2)
P 		31.4
(-2.9)
P 		52.2
(0.1)
P 		31
(-3)
P 		41
C 71.8
(0.7)
P 		100
(3)
P 		27.1
(-3)
P 		34.3
(-2.4)
A 		36.3
(-2.2)
P 		31.5
(-2.6)
A 		73
avr 56.4
(0.3) 		81
(3) 		33.2
(-2.3) 		34.8
(-2.1) 		44.3
(-1.1) 		27.1
(-3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11998
Sequence Type Exemplar sequence
Representative Public ID F46B6.9 NCBI
Target Description F46B6.9 /REP_DB=WormBase Gene ID /WP=CE26975 /TR=Q20450 /GB=CAA94825.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073127(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073127 NCBI Caenorhabditis elegans F46B6.9 (F46B6.9) mRNA, complete cds. 10/11 None
SNAP00000041201 ENSEMBL cdna:SNAP chromosome:CEL140:V:9799470:9800656:1 10/11 None
GENEFINDER00000041215 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9799470:9800656:1 10/11 None
F46B6.9 ENSEMBL cdna:known chromosome:CEL140:V:9799444:9800798:1 gene:F46B6.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9799469-9800656(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46B6.9
Entrez Gene 179376 Entrez gene
SwissProt Q20450 EMBL-EBI
WormBase CE26975 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94825 Hypothetical protein F46B6.9 [Caenorhabditis elegans] ref|NP_505528.1| F46B6.9 [Caenorhabditis elegans] 1.0E-123
blast CAE72257 Hypothetical protein CBG19376 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505528.1 4 7-29,62-84,97-119,141-163
F46B6.9 4 7-29,62-84,97-119,141-163
SNAP00000041201 4 7-29,62-84,97-119,141-163
GENEFINDER00000041215 4 7-29,62-84,97-119,141-163
Sequence
Target Sequence 
>C. ELEGANS:177542_AT
agtgctcaagaacaattgtcctagtgacaattctacatgtaatgttcacatgcttatcac
tctatggaatatattcgtgtcgagcgaaattcatgaaaccattgattgtggatattataa
caagttcgattttcctgctcattttcgtattcttctcgttattcatgtattggaggctca
acactcttggctcaataactgaaaaagaaacgacaaaactgcaacttcgtaacatgtacg
taggagttggatttctgatagtttacgctatttggacgatagttcaatgtcttgcacact
ccgacacaaaaaagttacgtgctgacttcatgtattggatagaagaagagcgaatgtcga
tgagaagtcgacataatgtttcagttgataatcgatcggatagatcatcaaaaggttcaa
aagcatcaagagcatcaaaaagttcagcgagaagtgcaaaatctgaaattggaacaactg
caagtactgagagaaaatctccaagagaaggaacttccaaaggagattatcaaaaagttt
ccacaaactcatgcaatacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGCTCAAGAACAATTGTCCTAGT 150 59 245 Antisense
GTTCACATGCTTATCACTCTATGGA 411 445 288 Antisense
AACAAGTTCGATTTTCCTGCTCATT 379 135 363 Antisense
GCTCATTTTCGTATTCTTCTCGTTA 408 301 381 Antisense
CGTATTCTTCTCGTTATTCATGTAT 509 247 390 Antisense
ATTGGAGGCTCAACACTCTTGGCTC 549 3 413 Antisense
AAAACTGCAACTTCGTAACATGTAC 107 131 459 Antisense
GTTGGATTTCTGATAGTTTACGCTA 219 437 490 Antisense
TAGTTCAATGTCTTGCACACTCCGA 7 655 524 Antisense
GTTACGTGCTGACTTCATGTATTGG 116 447 558 Antisense
GTTTCCACAAACTCATGCAATACAT 395 451 781 Antisense
Sequence Source Affymetrix Proprietary Database