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[177541_at]

Description R160.6 /REP_DB=WormBase Gene ID /WP=CE19556 /TR=Q9TZD2 /GB=AAC68733.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.3
(-2.8)
A 		6.9
(-1.1)
A 		4
(-3)
A 		13.4
(3)
A 		9
B 2.7
(-3)
A 		3.6
(-1.7)
A 		2.7
(-3)
A 		6.9
(3)
A 		4
C 6.5
(3)
A 		3.6
(-1.2)
A 		2.4
(-3)
A 		5.6
(1.7)
A 		4
avr 4.5
(-1.4) 		4.7
(-1.2) 		3
(-3) 		8.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 3.4
(3)
A 		2.4
(-2.5)
A 		2.5
(-1.9)
A 		2.3
(-3)
A 		2.4
(-2.5)
A 		2.8
(-0.3)
A 		1
B 5.5
(3)
A 		1.9
(-2.5)
A 		2.6
(-1.5)
A 		2.9
(-1)
A 		4.4
(1.3)
A 		1.6
(-3)
A 		4
C 2.4
(-2.3)
A 		3.3
(-1)
A 		3.1
(-1.3)
A 		2.8
(-1.7)
A 		6.2
(3)
A 		1.9
(-3)
A 		4
avr 3.8
(1.6) 		2.5
(-1.9) 		2.7
(-1.4) 		2.7
(-1.4) 		4.3
(3) 		2.1
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.5
(-0.3)
A 		1.5
(-0.3)
A 		1.1
(-3)
A 		2
(3)
A 		1
B 0.8
(-1.7)
A 		0.9
(-1)
A 		0.6
(-3)
A 		1.5
(3)
A 		1
C 2.2
(3)
A 		1
(-2.1)
A 		0.8
(-3)
A 		0.9
(-2.6)
A 		1
avr 1.5
(3) 		1.1
(-0.4) 		0.8
(-3) 		1.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.9
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.7
(-1)
A 		0.7
(-1)
A 		0
B 1.9
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.8
(-2.1)
A 		1.8
(2.5)
A 		0.6
(-3)
A 		1
C 0.9
(-1.7)
A 		1
(-1.3)
A 		0.8
(-2.1)
A 		0.6
(-3)
A 		2
(3)
A 		0.6
(-3)
A 		1
avr 1.1
(0.3) 		0.8
(-1.7) 		0.7
(-2.3) 		0.7
(-2.3) 		1.5
(3) 		0.6
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177541_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16690
Sequence Type Exemplar sequence
Representative Public ID R160.6 NCBI
Target Description R160.6 /REP_DB=WormBase Gene ID /WP=CE19556 /TR=Q9TZD2 /GB=AAC68733.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076353 NCBI Caenorhabditis elegans R160.6 (R160.6) mRNA, complete cds. 11/11 None
R160.6 ENSEMBL cdna:known chromosome:CEL140:X:4371009:4373184:-1 gene:R160.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044070 4/11 Cross Hyb Matching Probes None
GENEFINDER00000044078 2/11 Cross Hyb Matching Probes None
SNAP00000044072 6/11 Cross Hyb Matching Probes None
GENEFINDER00000044082 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4371009-4373185(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R160.6
Entrez Gene 187915 Entrez gene
SwissProt Q9TZD2 EMBL-EBI
WormBase CE19556 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68733 Hypothetical protein R160.6 [Caenorhabditis elegans] ref|NP_508754.1| R160.6 [Caenorhabditis elegans] 3.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508754.1 2 15-37,79-98
R160.6 2 15-37,79-98
Sequence
Target Sequence 
>C. ELEGANS:177541_AT
ttttcctatggttcgctgtggtatttggagttttgctagccgttgcagcatgtggatgcg
tgttcataattctcgtagagccgtgtgttcaacgacgccgatattcgagggctgccagag
ttgcggcccgtttcaactcggaaaacgatacagccgttttgctgtcgacgcgtcgagata
agatgaagtctgcacacattctgcttttggcgtttcttgcactgttcttagtggtggggg
taataattataggcgaacaaaatagaatattactctaccaccgtagtaagacctggaata
ctattaaagtgggcaaaaacgggcaacatcgggcggtccagatccccatgagcctctgct
cctgcccacaacttttcaataatcgccaattgtcgcccgttttcgttttttttgttgccc
gttacatgctcggcacggtgtactgttgtccagatatttcgattttcagcatgttggtca
tatttgatgagtactaccactgcgacattaccggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCCTATGGTTCGCTGTGGTATT 195 677 53 Antisense
GCTAGCCGTTGCAGCATGTGGATGC 428 299 87 Antisense
GTAGAGCCGTGTGTTCAACGACGCC 105 457 127 Antisense
ACGACGCCGATATTCGAGGGCTGCC 513 91 144 Antisense
CAGAGTTGCGGCCCGTTTCAACTCG 681 205 168 Antisense
TACAGCCGTTTTGCTGTCGACGCGT 391 641 201 Antisense
CACACATTCTGCTTTTGGCGTTTCT 58 195 245 Antisense
GCCCACAACTTTTCAATAATCGCCA 581 285 416 Antisense
TTTTTGTTGCCCGTTACATGCTCGG 611 673 461 Antisense
TCGGCACGGTGTACTGTTGTCCAGA 488 607 482 Antisense
TACTACCACTGCGACATTACCGGAT 554 643 544 Antisense
Sequence Source Affymetrix Proprietary Database