[Home] | [Total List]

[177540_at]

Description C29F4.3 /REP_DB=WormBase Gene ID /WP=CE03040 /TR=Q18304 /GB=CAA92731.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 38      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 213.4
(3)
A 		91.5
(-1.8)
A 		61.2
(-3)
A 		145.5
(0.3)
A 		152
B 211.7
(3)
P 		114.4
(-1.7)
A 		86.8
(-3)
A 		162.1
(0.6)
A 		125
C 255
(3)
A 		124.1
(-1.7)
A 		87.5
(-3)
A 		127.4
(-1.6)
A 		168
avr 226.7
(3) 		110
(-1.7) 		78.5
(-3) 		145
(-0.3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 138.7
(2.6)
A 		143.2
(3)
A 		125.5
(1.6)
A 		78.7
(-2.1)
A 		85.2
(-1.6)
A 		66.9
(-3)
A 		76
B 177.4
(3)
A 		117.9
(-0.6)
A 		112.6
(-0.9)
A 		114.4
(-0.8)
A 		82.9
(-2.7)
A 		77.3
(-3)
A 		100
C 141.4
(3)
A 		112.9
(0.6)
A 		89.5
(-1.3)
A 		118.4
(1.1)
A 		69.3
(-3)
A 		81.6
(-2)
A 		72
avr 152.5
(3) 		124.7
(0.8) 		109.2
(-0.4) 		103.8
(-0.8) 		79.1
(-2.7) 		75.3
(-3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 77.7
(3)
A 		19.9
(-2.6)
A 		16
(-3)
A 		21.3
(-2.5)
A 		62
B 67.5
(3)
P 		28.3
(-2)
A 		20.1
(-3)
A 		34.5
(-1.2)
A 		47
C 84.4
(3)
A 		35.7
(-1.6)
A 		30.5
(-2.1)
A 		21.5
(-3)
A 		63
avr 76.5
(3) 		28
(-2.4) 		22.2
(-3) 		25.8
(-2.6) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 25.6
(-1.4)
A 		50.9
(3)
A 		27.3
(-1.1)
A 		19.9
(-2.4)
A 		25.7
(-1.4)
A 		16.3
(-3)
A 		35
B 61.7
(3)
A 		39.2
(-0.9)
A 		27.4
(-3)
A 		30.3
(-2.5)
A 		33.7
(-1.9)
A 		28.8
(-2.8)
A 		34
C 52.4
(3)
A 		34.5
(-0.6)
A 		22.8
(-2.9)
A 		23.8
(-2.7)
A 		22.4
(-3)
A 		27.3
(-2)
A 		30
avr 46.6
(3) 		41.5
(1.6) 		25.8
(-2.5) 		24.7
(-2.8) 		27.3
(-2.1) 		24.1
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177540_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8587
Sequence Type Exemplar sequence
Representative Public ID C29F4.3 NCBI
Target Description C29F4.3 /REP_DB=WormBase Gene ID /WP=CE03040 /TR=Q18304 /GB=CAA92731.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069705 NCBI Caenorhabditis elegans C29F4.3 (C29F4.3) mRNA, complete cds. 11/11 None
SNAP00000037121 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11222019:11223907:-1 11/11 None
GENEFINDER00000037127 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11222019:11223907:-1 11/11 None
C29F4.3 ENSEMBL cdna:known chromosome:CEL140:IV:11222019:11223907:-1 gene:C29F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11222024-11223913(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F4.3
Entrez Gene 183008 Entrez gene
SwissProt Q18304 EMBL-EBI
WormBase CE03040 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92731 Hypothetical protein C29F4.3 [Caenorhabditis elegans] ref|NP_502106.1| C29F4.3 [Caenorhabditis elegans] 0.0
blast CAE62023 Hypothetical protein CBG06034 [Caenorhabditis briggsae] 1.0E-159
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502106.1 7 52-71,78-99,114-136,143-162,177-199,232-251,266-288
C29F4.3 7 52-71,78-99,114-136,143-162,177-199,232-251,266-288
SNAP00000037121 7 52-71,78-99,114-136,143-162,177-199,232-251,266-288
GENEFINDER00000037127 7 52-71,78-99,114-136,143-162,177-199,232-251,266-288
Sequence
Target Sequence 
>C. ELEGANS:177540_AT
ttgttcctcactggccaaatatcttggaatttttatactttcatatgcaaaaaggttgat
attgactcggaaaagagagaaatcaaatcaaatgatctcgtcgaagcagccaatgacgta
gttctgaatgcaaatggaaggctcatctgggcaagttggttctcattaatcattgtgatt
ctggcagttccacaaattgttgactaccgagttgttcttaccacttcatggattccctat
cattttcttgtccaatcgcttgttcaactcaatgctcttcttctatctgttacggtattc
ttggtactcccaacttatcgatcagtaatcttcaatcgttgttcaaactacaaccgaatc
ataaaagtggaagaattcaaaatagaaaaggaacaagagaagtctgaaaaccaactgtca
aagaaacaactcgaaaaagaagcagaagcacttgaaaaccatcagcctccgtctcatcag
cctgtaaatcacaacttttcgattccacattttcaacacgtgacaattcctcgtttccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTCCTCACTGGCCAAATATCTT 217 705 565 Antisense
GGAAGGCTCATCTGGGCAAGTTGGT 360 527 700 Antisense
GTTGACTACCGAGTTGTTCTTACCA 455 433 763 Antisense
GTTCTTACCACTTCATGGATTCCCT 382 443 778 Antisense
GGATTCCCTATCATTTTCTTGTCCA 78 509 794 Antisense
TTGTCCAATCGCTTGTTCAACTCAA 350 707 812 Antisense
CTCTTCTTCTATCTGTTACGGTATT 646 229 839 Antisense
TTGGTACTCCCAACTTATCGATCAG 176 709 865 Antisense
CTCCGTCTCATCAGCCTGTAAATCA 143 235 1031 Antisense
ACAACTTTTCGATTCCACATTTTCA 300 113 1055 Antisense
AACACGTGACAATTCCTCGTTTCCG 113 135 1079 Antisense
Sequence Source Affymetrix Proprietary Database