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[177538_at]

Description T26E4.7 /REP_DB=WormBase Gene ID /WP=CE16478 /TR=O45841 /GB=CAB03436.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 23.4
(2.5)
A 		18.5
(0.9)
A 		6.4
(-3)
A 		24.9
(3)
A 		19
B 42.7
(3)
A 		16.1
(-1.7)
A 		8.6
(-3)
A 		21.7
(-0.7)
A 		34
C 20.9
(-1.6)
A 		9.9
(-2.9)
A 		8.6
(-3)
A 		60.6
(3)
A 		52
avr 29
(1.6) 		14.8
(-1.5) 		7.9
(-3) 		35.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 14.2
(-0.1)
A 		3.2
(-3)
A 		12.3
(-0.6)
A 		17.2
(0.6)
A 		5
(-2.5)
A 		26.3
(3)
A 		23
B 11.9
(-2.2)
A 		9.3
(-2.6)
A 		13.2
(-2)
A 		42.9
(3)
A 		7
(-3)
A 		6.9
(-3)
A 		36
C 38.1
(2.1)
A 		44.2
(3)
A 		13.4
(-1.7)
A 		8.7
(-2.4)
A 		5
(-3)
A 		8.1
(-2.5)
A 		39
avr 21.4
(2.5) 		18.9
(1.6) 		13
(-0.5) 		22.9
(3) 		5.7
(-3) 		13.8
(-0.2) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.5
(3)
A 		4
(-1)
A 		1.7
(-3)
A 		3.6
(-1.3)
A 		7
B 13.6
(3)
A 		4
(-2)
A 		2
(-3)
A 		4.6
(-1.7)
A 		12
C 6.9
(0.3)
A 		2.8
(-3)
A 		3
(-2.8)
A 		10.2
(3)
A 		7
avr 9.7
(3) 		3.6
(-1.9) 		2.2
(-3) 		6.1
(0.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.6
(-1.3)
A 		1.1
(-3)
A 		2.7
(-1.2)
A 		4.4
(0.7)
A 		1.5
(-2.5)
A 		6.4
(3)
A 		5
B 4.1
(-2)
A 		3.1
(-2.7)
A 		3.2
(-2.6)
A 		11.4
(3)
A 		2.8
(-2.9)
A 		2.6
(-3)
A 		9
C 14.1
(3)
A 		13.5
(2.7)
A 		3.4
(-2.1)
A 		1.7
(-3)
A 		1.6
(-3)
A 		2.7
(-2.5)
A 		13
avr 6.9
(3) 		5.9
(1.8) 		3.1
(-1.7) 		5.8
(1.7) 		2
(-3) 		3.9
(-0.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177538_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13696
Sequence Type Exemplar sequence
Representative Public ID T26E4.7 NCBI
Target Description T26E4.7 /REP_DB=WormBase Gene ID /WP=CE16478 /TR=O45841 /GB=CAB03436.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074536(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074536 NCBI Caenorhabditis elegans T26E4.7 (T26E4.7) mRNA, complete cds. 11/11 None
GENEFINDER00000017610 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15796386:15800628:1 10/11 None
T26E4.7 ENSEMBL cdna:known chromosome:CEL140:V:15796437:15797778:1 gene:T26E4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017596 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15796436-15797778(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26E4.7
Entrez Gene 188933 Entrez gene
SwissProt O45841 EMBL-EBI
WormBase CE16478 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03436 Hypothetical protein T26E4.7 [Caenorhabditis elegans] ref|NP_506937.1| T26E4.7 [Caenorhabditis elegans] 0.0
blast CAB03436 Hypothetical protein T26E4.7 [Caenorhabditis elegans] ref|NP_506937.1| T26E4.7 [Caenorhabditis elegans] 1.0E-168
blast CAB03437 Hypothetical protein T26E4.8 [Caenorhabditis elegans] ref|NP_506938.1| T26E4.8 [Caenorhabditis elegans] 1.0E-128
blast AAC78192 Hypothetical protein F46F5.14 [Caenorhabditis elegans] ref|NP_493813.2| F46F5.14 [Caenorhabditis elegans] 1.0E-127
blast AAC19260 Hypothetical protein ZK1055.2 [Caenorhabditis elegans] ref|NP_504676.1| ZK1055.2 [Caenorhabditis elegans] 1.0E-124
blast AAC78192 Hypothetical protein F46F5.14 [Caenorhabditis elegans] ref|NP_493813.2| F46F5.14 [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.6E-19
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.3E-7
Sequence
Target Sequence 
>C. ELEGANS:177538_AT
caaacttccttttagcttccatggaactgacaatggagcccttcacatgtacctagctga
gcaccttttccccgacgcgtccgccgagtccaatatctgcaagaaagcttacagcgaatc
gaaaagctatcgggaccttttcacgtttgaagcctgcataaagtcattatttggagttgg
aactcgttttgggaaagttcgaattatgaaaaaagtagtttatttgttcattttttgttt
taaaaatacgcaatttcggggaaccggatgggctcgagacggatggctcacctcaatgat
gtggcacccggacctagattttatgattcatggatggaaaactaatcagctacggaaaac
tccaaatatgacaatgaggtatgttggggcgcccgcctcaccggtccaaatgggacgaag
tcagtggtacaacccgttggctggcccgactgatctggaaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACTTCCTTTTAGCTTCCATGGA 374 191 438 Antisense
GGAACTGACAATGGAGCCCTTCACA 549 529 460 Antisense
TCACATGTACCTAGCTGAGCACCTT 699 625 480 Antisense
TCCGCCGAGTCCAATATCTGCAAGA 7 597 517 Antisense
GGACCTTTTCACGTTTGAAGCCTGC 570 523 570 Antisense
CGGATGGGCTCGAGACGGATGGCTC 277 243 702 Antisense
GGCTCACCTCAATGATGTGGCACCC 435 537 722 Antisense
GGCACCCGGACCTAGATTTTATGAT 88 537 740 Antisense
CGCCTCACCGGTCCAAATGGGACGA 336 255 831 Antisense
AAGTCAGTGGTACAACCCGTTGGCT 432 1 855 Antisense
GCTGGCCCGACTGATCTGGAAAAAT 109 295 877 Antisense
Sequence Source Affymetrix Proprietary Database