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[177537_at]

Description T24C2.2 /REP_DB=WormBase Gene ID /WP=CE03716 /TR=Q22725 /GB=CAA92200.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 03      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 4.6
(-2.6)
A 		3.3
(-3)
A 		7
(-1.8)
A 		21.1
(3)
A 		18
B 15
(3)
A 		5.9
(-3)
A 		13.5
(2)
A 		6.3
(-2.7)
A 		9
C 19.8
(-2)
A 		6.1
(-2.8)
A 		1.6
(-3)
A 		115.5
(3)
A 		114
avr 13.1
(-1.9) 		5.1
(-3) 		7.4
(-2.7) 		47.6
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 3.6
(-3)
A 		3.5
(-3)
A 		4.2
(-2.9)
A 		3.6
(-3)
A 		3.7
(-3)
A 		37.8
(3)
A 		34
B 7
(-2.5)
A 		3.6
(-2.8)
A 		7.3
(-2.5)
A 		1.8
(-3)
A 		12.1
(-2)
A 		66.6
(3)
A 		65
C 7.3
(-2.6)
A 		60.5
(2.6)
A 		3.6
(-3)
A 		8.9
(-2.5)
A 		4.1
(-3)
A 		64.3
(3)
A 		61
avr 6
(-2.9) 		22.5
(-0.9) 		5
(-3) 		4.8
(-3) 		6.6
(-2.8) 		56.2
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1.7
(-0.5)
A 		0.7
(-3)
A 		1.8
(-0.3)
A 		3.1
(3)
A 		2
B 4.8
(3)
A 		1.5
(-2.7)
A 		3.1
(0.1)
A 		1.3
(-3)
A 		4
C 6.6
(-1.1)
A 		1.8
(-2.6)
A 		0.6
(-3)
A 		19.5
(3)
A 		19
avr 4.4
(-0.2) 		1.3
(-3) 		1.8
(-2.6) 		8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.2
(-2.6)
A 		0.9
(-2.9)
A 		0.9
(-2.9)
A 		1.1
(-2.7)
A 		9.2
(3)
A 		9
B 2.4
(-2.5)
A 		1.2
(-2.8)
A 		1.8
(-2.7)
A 		0.5
(-3)
A 		4.9
(-1.9)
A 		24.8
(3)
A 		24
C 2.7
(-2.5)
A 		18.4
(2.1)
A 		0.9
(-3)
A 		1.8
(-2.7)
A 		1.3
(-2.9)
A 		21.5
(3)
A 		21
avr 1.9
(-2.7) 		6.9
(-1) 		1.2
(-3) 		1.1
(-3) 		2.4
(-2.6) 		18.5
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17737
Sequence Type Exemplar sequence
Representative Public ID T24C2.2 NCBI
Target Description T24C2.2 /REP_DB=WormBase Gene ID /WP=CE03716 /TR=Q22725 /GB=CAA92200.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078020 NCBI Caenorhabditis elegans T24C2.2 (T24C2.2) mRNA, complete cds. 11/11 None
SNAP00000015288 ENSEMBL cdna:SNAP chromosome:CEL140:X:14545774:14547251:1 11/11 None
GENEFINDER00000015291 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14545774:14547251:1 11/11 None
T24C2.2 ENSEMBL cdna:known chromosome:CEL140:X:14545774:14546639:1 gene:T24C2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14545773-14546639(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24C2.2
Entrez Gene 188839 Entrez gene
SwissProt Q22725 EMBL-EBI
WormBase CE03716 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92200 Hypothetical protein T24C2.2 [Caenorhabditis elegans] ref|NP_510421.1| T24C2.2 [Caenorhabditis elegans] 1.0E-99
blast CAA92200 Hypothetical protein T24C2.2 [Caenorhabditis elegans] ref|NP_510421.1| T24C2.2 [Caenorhabditis elegans] 2.0E-96
Sequence
Target Sequence 
>C. ELEGANS:177537_AT
acagattcgagcgcaccatcattgtcgccaatgacaataagaccgcgattctcctgattt
tgcgtctgaaacaagacggagtgaaaacaagtgtttttacaaactatttggcggacgatg
agattgttttgggagagcaaaaaaaggcttttgtggaaggtgctcacaaagttgcggtgt
gcaccacacagatgttcgagaaaatggaatttgatgtggtgaagcattacatcttcgtag
atgctccagccgaggagaagcttcgtgaccagctgcgccagaaggcagtttgtgaaggca
agaagatccgtgtcgatcttgtgatgtctgaatcatatgaagtctccgtcaaagttgaag
agaagcccgctgaagcatcaaagcccagcccaaagcgcaaatgctcattcgacatctaca
gtatcaaaccaaacaaacaaggaaagtttgtgattccggcagaatacatgggattcgacg
agagcgctgaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGATTCGAGCGCACCATCATTGT 406 107 113 Antisense
ACCGCGATTCTCCTGATTTTGCGTC 5 91 154 Antisense
TGTGCACCACACAGATGTTCGAGAA 308 557 290 Antisense
TACATCTTCGTAGATGCTCCAGCCG 417 643 340 Antisense
GCCGAGGAGAAGCTTCGTGACCAGC 11 285 361 Antisense
GACCAGCTGCGCCAGAAGGCAGTTT 506 383 379 Antisense
ATCCGTGTCGATCTTGTGATGTCTG 190 39 418 Antisense
GAAGCCCGCTGAAGCATCAAAGCCC 210 345 474 Antisense
AGCCCAAAGCGCAAATGCTCATTCG 290 83 499 Antisense
TGCTCATTCGACATCTACAGTATCA 146 581 514 Antisense
GGGATTCGACGAGAGCGCTGAGGAT 240 497 582 Antisense
Sequence Source Affymetrix Proprietary Database