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[177536_at] G-protein coupled receptor, srv family

Description F13A7.3 /REP_DB=WormBase Gene ID /WP=CE15810 /TR=O45353 /GB=CAB07575.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 27      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 31.3
(-1.8)
A 		81.3
(1.7)
A 		13.9
(-3)
A 		100.7
(3)
A 		87
B 30.8
(-3)
A 		39.6
(-1.8)
A 		38.5
(-1.9)
A 		74.5
(3)
A 		44
C 36.8
(3)
A 		25.3
(0.5)
A 		9.6
(-3)
A 		13.7
(-2.1)
A 		27
avr 33
(-1.3) 		48.7
(1) 		20.7
(-3) 		63
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 26.9
(0.9)
A 		8.1
(-2.3)
A 		4.3
(-3)
A 		6.6
(-2.6)
A 		38.9
(3)
A 		6.7
(-2.6)
A 		35
B 11.7
(-3)
A 		30.5
(-0.2)
A 		48.6
(2.5)
A 		52.3
(3)
A 		23.2
(-1.3)
A 		21.9
(-1.5)
A 		41
C 26.6
(-0.7)
A 		51.6
(3)
A 		17.3
(-2.1)
A 		11.1
(-3)
A 		19.8
(-1.7)
A 		39.8
(1.3)
A 		41
avr 21.7
(-3) 		30.1
(3) 		23.4
(-1.8) 		23.3
(-1.9) 		27.3
(1) 		22.8
(-2.2) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.4
(0.3)
A 		17.7
(3)
A 		3.6
(-3)
A 		14.7
(1.7)
A 		14
B 9.8
(-2.2)
A 		9.8
(-2.2)
A 		8.9
(-3)
A 		15.9
(3)
A 		7
C 12.2
(3)
A 		7.3
(0)
A 		3.3
(-2.4)
A 		2.3
(-3)
A 		10
avr 11.1
(2.5) 		11.6
(3) 		5.3
(-3) 		11
(2.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5
(-0.7)
A 		2.9
(-1.9)
A 		0.9
(-3)
A 		1.7
(-2.6)
A 		11.7
(3)
A 		1.6
(-2.6)
A 		11
B 4.1
(-3)
A 		10.2
(0.7)
A 		11.8
(1.7)
A 		13.9
(3)
A 		9.4
(0.2)
A 		8.2
(-0.5)
A 		10
C 9.8
(0.4)
A 		15.7
(3)
A 		4.4
(-2)
A 		2.2
(-3)
A 		6.4
(-1.1)
A 		13.3
(1.9)
A 		14
avr 6.3
(-2.1) 		9.6
(3) 		5.7
(-3) 		5.9
(-2.7) 		9.2
(2.4) 		7.7
(0.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13691
Sequence Type Exemplar sequence
Representative Public ID F13A7.3 NCBI
Target Description F13A7.3 /REP_DB=WormBase Gene ID /WP=CE15810 /TR=O45353 /GB=CAB07575.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074734
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074734 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-34) (srv-34) mRNA, complete cds. None
F13A7.3 ENSEMBL cdna:known chromosome:CEL140:V:16375000:16377359:-1 gene:F13A7.3 None
GENEFINDER00000025240 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16375000:16377338:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025219 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16374999-16377428(-) 81.21 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srv family
Gene Symbol srv-34
Ensembl F13A7.3
Entrez Gene 184400 Entrez gene
SwissProt O45353 EMBL-EBI
WormBase CE33049 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07575 Hypothetical protein F13A7.3 [Caenorhabditis elegans] ref|NP_507135.2| Serpentine Receptor, class V family member (srv-34) [Caenorhabditis elegans] 1.0E-165
blast CAB07575 Hypothetical protein F13A7.3 [Caenorhabditis elegans] ref|NP_507135.2| Serpentine Receptor, class V family member (srv-34) [Caenorhabditis elegans] 1.0E-155
blast CAE74930 Hypothetical protein CBG22813 [Caenorhabditis briggsae] 3.0E-96
blast CAE74930 Hypothetical protein CBG22813 [Caenorhabditis briggsae] 6.0E-96
blast CAE74929 Hypothetical protein CBG22812 [Caenorhabditis briggsae] 3.0E-51
blast CAE74929 Hypothetical protein CBG22812 [Caenorhabditis briggsae] 1.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507135.2 7 10-32,48-70,85-107,128-150,170-192,225-247,262-284
F13A7.3 7 10-32,48-70,85-107,128-150,170-192,225-247,262-284
GENEFINDER00000025240 7 5-24,66-88,103-125,146-168,188-210,247-269,284-306
Sequence
Target Sequence 
>C. ELEGANS:177536_AT
ttgctcattggcttcactcattggctcgtagctttcttgatctaccttccagcactttta
cacactgatatttatttcgagaacgaagtaactcttctcaccgtcggaagtacaactttc
gttcaatggacgtctctgacaatagcagtggtgatggttcgcgccagaaaagtagaacaa
ggtgttctgacaagcccctcaaccgtacatatttccggtccgcgtttctcaaaaatccct
caacgcaccaagtttcagtttcgatttcagtacaaaaaccacgaaaaaactaaaagacgc
ccgcctaacactgcacgttttcatcctcgttctattctgcatcgtcacgtttttcttcta
cattggagaatatgtgttggcaaccgacgccgattacgggcgttacgtcttttttatcca
acactatctggcaatctatcgtttattaatccaataatgctattaatgatgaatcgggat
gttcagagcgcgttttgttgccggtttaaggtaggtctcatggcagagaatggcagagaa
aaacctcttccacggccacgtgtcgatttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTCATTGGCTTCACTCATTGGC 148 701 778 Antisense
ACTCATTGGCTCGTAGCTTTCTTGA 259 101 793 Antisense
ACCTTCCAGCACTTTTACACACTGA 529 87 821 Antisense
GAACGAAGTAACTCTTCTCACCGTC 709 341 858 Antisense
AACAAGGTGTTCTGACAAGCCCCTC 438 119 953 Antisense
CAACCGTACATATTTCCGGTCCGCG 213 147 977 Antisense
GTTTCTCAAAAATCCCTCAACGCAC 309 449 1001 Antisense
ATTCTGCATCGTCACGTTTTTCTTC 459 7 1111 Antisense
ACGTCTTTTTTATCCAACACTATCT 299 95 1182 Antisense
GATGTTCAGAGCGCGTTTTGTTGCC 167 409 1255 Antisense
CTTCCACGGCCACGTGTCGATTTAC 398 217 1324 Antisense
Sequence Source Affymetrix Proprietary Database