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[177535_s_at]

Description R155.1 /REP_DB=WormBase Gene ID /WP=CE12862 /TR=O01925 /GB=AAB54271.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 56      6grp_total > 50      4grp_total > 24      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1073
1 2 3 4 range
A 2295
(-0.9)
P 		2248.8
(-2)
P 		2455.7
(3)
P 		2206.9
(-3)
P 		249
B 2238.1
(-3)
P 		2292.2
(-2.5)
P 		2456
(-1)
P 		2905
(3)
P 		667
C 1831.7
(-3)
P 		2365.8
(1.8)
P 		2313.4
(1.4)
P 		2494.3
(3)
P 		663
avr 2121.6
(-3) 		2302.3
(-0.4) 		2408.4
(1.2) 		2535.4
(3) 		414

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1039
1 2 3 4 5 6 range
A 2047.1
(1.1)
P 		1837.7
(-0.4)
P 		2308.9
(3)
P 		2034.5
(1)
P 		1486.2
(-3)
P 		1700
(-1.4)
P 		823
B 1827.5
(-1.9)
P 		2034.2
(-0.5)
P 		2524.8
(3)
P 		2365.1
(1.9)
P 		1671.8
(-3)
P 		1700.1
(-2.8)
P 		853
C 2115.3
(1.8)
P 		1797.7
(-2.6)
P 		2125.2
(2)
P 		2198.9
(3)
P 		1767.1
(-3)
P 		1773.8
(-2.9)
P 		432
avr 1996.6
(0.1) 		1889.9
(-0.8) 		2319.6
(3) 		2199.5
(1.9) 		1641.7
(-3) 		1724.6
(-2.3) 		678
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 513
1 2 3 4 range
A 835.6
(3)
P 		488.1
(-1.1)
P 		642
(0.7)
P 		323
(-3)
P 		513
B 713.7
(3)
P 		566.1
(-3)
P 		569.1
(-2.9)
P 		619.1
(-0.8)
P 		148
C 606.3
(-0.1)
P 		680.2
(1)
P 		806.3
(3)
P 		420.6
(-3)
P 		386
avr 718.5
(3) 		578.1
(-0.2) 		672.5
(2) 		454.2
(-3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 377.4
(-3)
P 		653.6
(3)
P 		502.8
(-0.3)
P 		516
(0)
P 		448.5
(-1.5)
P 		413.9
(-2.2)
P 		276
B 635.9
(-0.9)
P 		677.1
(2.8)
P 		613.1
(-3)
P 		626.4
(-1.8)
P 		679.2
(3)
P 		633.9
(-1.1)
P 		66
C 784.1
(3)
P 		548.5
(-1.1)
P 		540.9
(-1.3)
P 		442.2
(-3)
P 		571.8
(-0.7)
P 		593.8
(-0.3)
P 		342
avr 599.1
(1.3) 		626.4
(3) 		552.3
(-1.5) 		528.2
(-3) 		566.5
(-0.7) 		547.2
(-1.8) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177535_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8152
Sequence Type Exemplar sequence
Representative Public ID R155.1 NCBI
Target Description R155.1 /REP_DB=WormBase Gene ID /WP=CE12862 /TR=O01925 /GB=AAB54271.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027564(11), NM_001027565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027564 NCBI Caenorhabditis elegans R155.1a (R155.1) mRNA, complete cds. 11/11 None
NM_001027565 NCBI Caenorhabditis elegans R155.1b (R155.1) mRNA, complete cds. 11/11 None
SNAP00000032918 ENSEMBL cdna:SNAP chromosome:CEL140:III:1952124:1961905:-1 11/11 None
GENEFINDER00000032922 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1952124:1957832:-1 11/11 None
R155.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:1951891:1961933:-1 gene:R155.1 11/11 None
R155.1a.2 ENSEMBL cdna:known chromosome:CEL140:III:1952007:1961933:-1 gene:R155.1 11/11 None
R155.1a.3 ENSEMBL cdna:known chromosome:CEL140:III:1952016:1961934:-1 gene:R155.1 11/11 None
R155.1b.2 ENSEMBL cdna:known chromosome:CEL140:III:1952124:1957850:-1 gene:R155.1 11/11 None
R155.1b.1 ENSEMBL cdna:known chromosome:CEL140:III:1952124:1961933:-1 gene:R155.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1952123-1961905(-) 100.0 100.0
Public Domain and Genome References
Ensembl R155.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54271 Hypothetical protein R155.1a [Caenorhabditis elegans] ref|NP_001022735.1| R155.1a [Caenorhabditis elegans] 0.0
blast CAE66463 Hypothetical protein CBG11740 [Caenorhabditis briggsae] 0.0
blast AAP31432 Hypothetical protein R155.1b [Caenorhabditis elegans] ref|NP_001022736.1| R155.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 5.1E-83
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 7.5E-63
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 7.0E-72
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022735.1 6 20-39,48-70,90-107,337-359,396-418,431-453
NP_001022736.1 3 205-227,264-286,299-321
R155.1a.1 6 20-39,48-70,90-107,337-359,396-418,431-453
R155.1a.2 6 20-39,48-70,90-107,337-359,396-418,431-453
R155.1a.3 6 20-39,48-70,90-107,337-359,396-418,431-453
R155.1b.2 3 205-227,264-286,299-321
R155.1b.1 3 205-227,264-286,299-321
SNAP00000032918 6 20-39,48-70,90-107,337-359,396-418,431-453
GENEFINDER00000032922 3 218-240,277-299,312-334
Sequence
Target Sequence 
>C. ELEGANS:177535_S_AT
atgggacggagttcgtgaccttcacatcatcaaatgggagaccggacacgactataactc
ggtcgtcgagtcgttcaactgcggaaccaatacttttgccaaaaatcaaaattttgcgat
ttttaacatttttgccactaaaatccatattcatcgtcgtctccgttgggttaacaataa
attggcatcacacgtgataactctatcatatttggcaatttggcatggatatcatcttgg
ttatttccttcttttcggcgttgaactcggatgtgttcaggctcaaaatcagctttatgc
tctgattaagaggactcccggatggtctgaggccatttctaagcctatttccaggccgtt
tatctggatttttggaaaactcacaatttcctactcgatgggattcgctttccttatgtt
tggactaattaagactaaatattggattgggcccgtcaaaagtctgtatttcatcggctt
catcatctatttcatcgtttggcccatcctccacatggtcctgctccgtgtgctgccacg
tcacccgaagaaggcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGACGGAGTTCGTGACCTTCAC 212 49 879 Antisense
GGGAGACCGGACACGACTATAACTC 657 455 914 Antisense
GTCGAGTCGTTCAACTGCGGAACCA 475 473 943 Antisense
ATATCATCTTGGTTATTTCCTTCTT 158 21 1107 Antisense
CTTCTTTTCGGCGTTGAACTCGGAT 363 219 1126 Antisense
TAAGAGGACTCCCGGATGGTCTGAG 346 635 1185 Antisense
TAAGCCTATTTCCAGGCCGTTTATC 158 639 1218 Antisense
AAAACTCACAATTTCCTACTCGATG 396 131 1254 Antisense
ACTCGATGGGATTCGCTTTCCTTAT 283 99 1271 Antisense
ATCATCTATTTCATCGTTTGGCCCA 173 31 1360 Antisense
TGCCACGTCACCCGAAGAAGGCGGC 456 585 1412 Antisense
Sequence Source Affymetrix Proprietary Database