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[177534_at]

Description F57C7.5 /REP_DB=WormBase Gene ID /WP=CE05998 /TR=Q20946 /GB=CAA93472.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 47      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 273.8
(3)
P 		81.1
(-1.5)
P 		44.8
(-2.3)
A 		16.2
(-3)
A 		258
B 249
(3)
P 		45.6
(-3)
A 		53.2
(-2.8)
A 		54.6
(-2.7)
A 		203
C 261.6
(3)
P 		68.8
(-2.4)
M 		72.3
(-2.3)
A 		45.9
(-3)
A 		216
avr 261.5
(3) 		65.2
(-2.3) 		56.8
(-2.5) 		38.9
(-3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 142.8
(3)
P 		63.5
(-1.9)
A 		45.3
(-3)
A 		58.1
(-2.2)
A 		53.8
(-2.5)
A 		71.4
(-1.4)
P 		98
B 151.1
(3)
P 		86.7
(-0.5)
P 		47.1
(-2.7)
A 		94.9
(-0.1)
A 		50
(-2.5)
A 		41
(-3)
A 		110
C 102.3
(3)
P 		96.5
(2.6)
A 		85.7
(1.8)
P 		34.8
(-1.8)
A 		18.4
(-3)
A 		36.7
(-1.7)
A 		84
avr 132.1
(3) 		82.2
(-0.3) 		59.4
(-1.8) 		62.6
(-1.6) 		40.7
(-3) 		49.7
(-2.4) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 99.7
(3)
P 		17.6
(-2.1)
P 		11.7
(-2.4)
A 		2.4
(-3)
A 		97
B 79.4
(3)
P 		11.3
(-3)
A 		12.3
(-2.9)
A 		11.6
(-3)
A 		68
C 86.6
(3)
P 		19.8
(-2.1)
M 		25.2
(-1.7)
A 		7.7
(-3)
A 		79
avr 88.6
(3) 		16.2
(-2.3) 		16.4
(-2.3) 		7.2
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 26.3
(3)
P 		22.6
(1.6)
A 		9.9
(-3)
A 		14.7
(-1.2)
A 		16.2
(-0.7)
A 		17.4
(-0.3)
P 		16
B 52.6
(3)
P 		28.9
(-0.5)
P 		11.4
(-3)
A 		25.1
(-1)
A 		20.3
(-1.7)
A 		15.3
(-2.4)
A 		41
C 37.9
(3)
P 		29.5
(1.4)
A 		21.8
(-0)
P 		7
(-2.8)
A 		6
(-3)
A 		12.3
(-1.8)
A 		32
avr 38.9
(3) 		27
(0.1) 		14.4
(-3) 		15.6
(-2.7) 		14.2
(-3) 		15
(-2.8) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177534_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16503
Sequence Type Exemplar sequence
Representative Public ID F57C7.5 NCBI
Target Description F57C7.5 /REP_DB=WormBase Gene ID /WP=CE05998 /TR=Q20946 /GB=CAA93472.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077372 NCBI Caenorhabditis elegans F57C7.5 (F57C7.5) mRNA, complete cds. 11/11 None
GENEFINDER00000028650 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10580983:10589464:-1 11/11 None
F57C7.5 ENSEMBL cdna:known chromosome:CEL140:X:10580988:10583839:-1 gene:F57C7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028643 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10580982-10583839(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57C7.5
Entrez Gene 186445 Entrez gene
SwissProt Q20946 EMBL-EBI
WormBase CE36492 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93472 Hypothetical protein F57C7.5 [Caenorhabditis elegans] ref|NP_509773.2| F57C7.5 [Caenorhabditis elegans] 0.0
blast CAE60805 Hypothetical protein CBG04502 [Caenorhabditis briggsae] 0.0
blast CAA93471 Hypothetical protein F57C7.4 [Caenorhabditis elegans] ref|NP_509774.1| F57C7.4 [Caenorhabditis elegans] 0.0
blast CAE60806 Hypothetical protein CBG04503 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509773.2 1 420-442
F57C7.5 1 420-442
GENEFINDER00000028650 1 1491-1513
Sequence
Target Sequence 
>C. ELEGANS:177534_AT
gaactttacatactcagtcgtgaaccgagaactgaacggcgattcttatgcaagaaagct
cacttttaactttttgaactcatacatcaacaaattgagcgatgatgctgatgattatgc
caagaaatgggctcaatcaatggctactactctgcaaatttctgaatatcgattcaaaaa
ctataaagtcttctttggagttgtttacaatatcacagtcacactaccgttcacagatga
gttgaaaccattaagcgctgaagaaatttctttgatgatacaggagtgcacaaaatatgg
agaatttgatttccagttagctgatgagtctgttcatttgggaattattgcaaacgcaga
tattaccatgctaatggttttacatgaaaccaattcattaatgatagcgttagctgtggt
actttccgttatccttggtctcggaacaatttttatatgtggtgcagttatggttaagtt
aagaacagataaacttattgtagaggagcgtcgtcgagcaaatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTTACATACTCAGTCGTGAAC 592 349 873 Antisense
GAACTGAACGGCGATTCTTATGCAA 185 349 901 Antisense
GCTCACTTTTAACTTTTTGAACTCA 494 299 930 Antisense
GGGCTCAATCAATGGCTACTACTCT 254 493 1001 Antisense
GGCTACTACTCTGCAAATTTCTGAA 120 537 1014 Antisense
AATATCACAGTCACACTACCGTTCA 534 173 1081 Antisense
GTCACACTACCGTTCACAGATGAGT 378 465 1090 Antisense
GAGTTGAAACCATTAAGCGCTGAAG 661 395 1111 Antisense
TAGCTGTGGTACTTTCCGTTATCCT 411 651 1283 Antisense
CCGTTATCCTTGGTCTCGGAACAAT 550 263 1298 Antisense
AGAGGAGCGTCGTCGAGCAAATTTG 349 67 1374 Antisense
Sequence Source Affymetrix Proprietary Database