[Home] | [Total List]

[177531_at]

Description C05E7.3 /REP_DB=WormBase Gene ID /WP=CE02977 /TR=Q17671 /GB=CAA91788.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 80      6grp_total > 35      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 265.3
(-0.6)
P 		129.3
(-3)
P 		145.6
(-2.7)
P 		474.5
(3)
P 		345
B 335.3
(1.5)
P 		109.4
(-3)
P 		110.3
(-3)
P 		412
(3)
P 		303
C 288.8
(-0.2)
P 		127.4
(-3)
P 		152.6
(-2.6)
P 		472.8
(3)
P 		345
avr 296.5
(0.2) 		122
(-3) 		136.2
(-2.7) 		453.1
(3) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 285.6
(3)
P 		191.7
(-0.6)
P 		206.2
(-0.1)
P 		129.8
(-3)
P 		139.7
(-2.6)
P 		163.3
(-1.7)
P 		156
B 264.4
(3)
P 		208.9
(0.7)
P 		175.4
(-0.7)
P 		133.6
(-2.5)
P 		121.4
(-3)
P 		184.6
(-0.3)
P 		143
C 193.5
(0.2)
P 		255.2
(3)
P 		190.4
(0.1)
P 		151
(-1.7)
P 		122.6
(-3)
P 		150.9
(-1.7)
P 		133
avr 247.8
(3) 		218.6
(1.5) 		190.7
(0.1) 		138.1
(-2.5) 		127.9
(-3) 		166.3
(-1.1) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 96.6
(3)
P 		28.1
(-3)
P 		38.1
(-2.1)
P 		69.5
(0.6)
P 		69
B 106.9
(3)
P 		27
(-2.9)
P 		25.6
(-3)
P 		87.8
(1.6)
P 		81
C 95.6
(3)
P 		36.6
(-3)
P 		53.2
(-1.3)
P 		79.7
(1.4)
P 		59
avr 99.7
(3) 		30.6
(-3) 		39
(-2.3) 		79
(1.2) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 52.6
(0.3)
P 		68.2
(3)
P 		44.9
(-1)
P 		32.9
(-3)
P 		42.2
(-1.4)
P 		39.8
(-1.8)
P 		35
B 92
(3)
P 		69.5
(0.6)
P 		42.6
(-2.2)
P 		35.4
(-3)
P 		49.3
(-1.5)
P 		68.8
(0.5)
P 		57
C 71.7
(2.2)
P 		77.9
(3)
P 		48.5
(-0.7)
P 		30.4
(-3)
P 		39.7
(-1.8)
P 		50.5
(-0.5)
P 		48
avr 72.1
(3) 		71.9
(3) 		45.3
(-1.1) 		32.9
(-3) 		43.7
(-1.3) 		53
(0.1) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177531_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17307
Sequence Type Exemplar sequence
Representative Public ID C05E7.3 NCBI
Target Description C05E7.3 /REP_DB=WormBase Gene ID /WP=CE02977 /TR=Q17671 /GB=CAA91788.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077752(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077752 NCBI Caenorhabditis elegans C05E7.3 (C05E7.3) mRNA, complete cds. 9/11 None
GENEFINDER00000014418 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12945535:12946481:-1 9/11 None
SNAP00000014413 ENSEMBL cdna:SNAP chromosome:CEL140:X:12945654:12946481:-1 10/11 None
C05E7.3 ENSEMBL cdna:known chromosome:CEL140:X:12945535:12946481:-1 gene:C05E7.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12945653-12946481(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05E7.3
Entrez Gene 182267 Entrez gene
SwissProt Q17671 EMBL-EBI
WormBase CE34154 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91788 Hypothetical protein C05E7.3 [Caenorhabditis elegans] ref|NP_510153.2| C05E7.3 [Caenorhabditis elegans] 1.0E-86
blast CAE70365 Hypothetical protein CBG16924 [Caenorhabditis briggsae] 2.0E-47
blast CAA91788 Hypothetical protein C05E7.3 [Caenorhabditis elegans] ref|NP_510153.2| C05E7.3 [Caenorhabditis elegans] 7.0E-40
blast CAE70365 Hypothetical protein CBG16924 [Caenorhabditis briggsae] 1.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510153.2 1 5-23
C05E7.3 1 5-23
GENEFINDER00000014418 1 5-23
SNAP00000014413 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:177531_AT
agtacaccttctttattctgattgctttcttcttcgctggggtcaccatggccaatcagg
attggaaaatgaggaagtttggaggcattgggggtggtgacgacatggcgcattttgata
ggttcatcacgcacaaacgagctataaacggggagctccgcaggtccagtattctttggg
gcaaacgggcacatgcttcagggctgaggaattttgaaagggacatccctctgattcctg
aagatttcatggtgatgtggccggtggaatcatccgagaaaacgatcaaagatgagaata
aattcgaaacggtaaacaaattacttggaatccactccttcctgttcacttatgattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTACACCTTCTTTATTCTGATTGC 696 61 17 Antisense
TATTCTGATTGCTTTCTTCTTCGCT 258 665 30 Antisense
TTGGGGGTGGTGACGACATGGCGCA 93 709 104 Antisense
GGTTCATCACGCACAAACGAGCTAT 630 505 137 Antisense
TATAAACGGGGAGCTCCGCAGGTCC 172 653 159 Antisense
CCGCAGGTCCAGTATTCTTTGGGGC 438 261 174 Antisense
CAAACGGGCACATGCTTCAGGGCTG 297 187 198 Antisense
ACATCCCTCTGATTCCTGAAGATTT 294 107 239 Antisense
GATGTGGCCGGTGGAATCATCCGAG 42 409 270 Antisense
AATTACTTGGAATCCACTCCTTCCT 46 175 335 Antisense
CTCCTTCCTGTTCACTTATGATTCT 525 235 351 Antisense
Sequence Source Affymetrix Proprietary Database