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[177530_at]

Description ZK285.1 /REP_DB=WormBase Gene ID /WP=CE18450 /TR=O62506 /GB=CAA19568.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 28      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 57.2
(-1.4)
A 		43.1
(-3)
A 		67.8
(-0.2)
P 		96.8
(3)
M 		54
B 79.6
(-1)
M 		129
(3)
P 		55.4
(-3)
P 		92.4
(0)
A 		74
C 61.5
(0.8)
A 		80
(3)
A 		29.1
(-3)
A 		62.9
(1)
M 		51
avr 66.1
(-0.2) 		84
(3) 		50.8
(-3) 		84
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 44.3
(-0.6)
A 		30.6
(-2.4)
A 		38.4
(-1.3)
P 		25.8
(-3)
A 		71.6
(3)
A 		53.3
(0.6)
P 		46
B 44.9
(-1.8)
A 		44.6
(-1.9)
P 		82
(3)
P 		51.5
(-1)
A 		35.9
(-3)
A 		65.9
(0.9)
P 		46
C 21.5
(-3)
A 		89
(1.6)
P 		42.6
(-1.6)
A 		109.6
(3)
A 		71.1
(0.4)
A 		48.8
(-1.1)
A 		88
avr 36.9
(-3) 		54.7
(1.2) 		54.3
(1.1) 		62.3
(3) 		59.5
(2.3) 		56
(1.5) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 20.8
(3)
A 		9.4
(-3)
A 		17.7
(1.4)
P 		14.2
(-0.5)
M 		11
B 25.4
(1)
M 		31.9
(3)
P 		12.8
(-3)
P 		19.7
(-0.8)
A 		19
C 20.4
(1.8)
A 		23
(3)
A 		10.1
(-3)
A 		10.6
(-2.8)
M 		13
avr 22.2
(3) 		21.4
(2.4) 		13.5
(-3) 		14.8
(-2.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.2
(-2.3)
A 		10.9
(-1.3)
A 		8.4
(-2.2)
P 		6.5
(-3)
A 		21.6
(3)
A 		13
(-0.4)
P 		15
B 15.6
(-1.9)
A 		14.8
(-2.3)
P 		19.9
(0.4)
P 		13.6
(-3)
A 		14.6
(-2.5)
A 		24.6
(3)
P 		11
C 8
(-3)
A 		27.2
(3)
P 		10.9
(-2.1)
A 		22
(1.4)
A 		23
(1.7)
A 		16.3
(-0.4)
A 		19
avr 10.6
(-3) 		17.6
(1.6) 		13.1
(-1.4) 		14
(-0.8) 		19.7
(3) 		18
(1.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13641
Sequence Type Exemplar sequence
Representative Public ID ZK285.1 NCBI
Target Description ZK285.1 /REP_DB=WormBase Gene ID /WP=CE18450 /TR=O62506 /GB=CAA19568.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074634(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074634 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-198) (str-198) mRNA, complete cds. 11/11 None
ZK285.1 ENSEMBL cdna:known chromosome:CEL140:V:16050391:16051730:1 gene:ZK285.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16050390-16051730(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-198
Ensembl ZK285.1
Entrez Gene 191280 Entrez gene
SwissProt O62506 EMBL-EBI
WormBase CE18450 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19568 Hypothetical protein ZK285.1 [Caenorhabditis elegans] ref|NP_507035.1| Seven TM Receptor family member (str-198) [Caenorhabditis elegans] 1.0E-139
blast CAB04642 Hypothetical protein R10E8.5 [Caenorhabditis elegans] ref|NP_507571.1| R10E8.5 [Caenorhabditis elegans] 3.0E-82
blast CAB03803 Hypothetical protein B0391.3 [Caenorhabditis elegans] ref|NP_506883.1| B0391.3 [Caenorhabditis elegans] 9.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.7E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507035.1 5 5-27,61-83,130-152,180-202,217-239
ZK285.1 5 5-27,61-83,130-152,180-202,217-239
Sequence
Target Sequence 
>C. ELEGANS:177530_AT
atttattcctatacattgctccattgttgagtggatttgtttggggactggtgacttggc
taacaatgcacgagtcttcatcgaaaactagttttttgaaaattcatttcgaacaagttt
taaaattgaacattgaagagtgtgcatacgtcgctttttggttttggcccgttgatgaac
acggagaatttcagcctgatttaatatcctttctaggttttggaattatgattctgattc
tgagttggtcgtttatcagtgtcgtttatttcggtttcaattgttataaatacatctcaa
aacaaatgggaagtttatcatcgcaatcgcaggctctgaaatctcttcaagctcaactgt
tctactctttaattttccaaaccgcaattccctgtgttttgatgtatctgcctgctggga
ttattttaagtgttcctatgtttaatgttggtttcaacttggaagttccacttctttcca
tcactatagcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTATTCCTATACATTGCTCCATT 620 15 191 Antisense
TGGGGACTGGTGACTTGGCTAACAA 489 551 232 Antisense
AGTGTGCATACGTCGCTTTTTGGTT 618 59 329 Antisense
TTGGTTTTGGCCCGTTGATGAACAC 271 553 348 Antisense
GTTGGTCGTTTATCAGTGTCGTTTA 506 435 434 Antisense
GGGAAGTTTATCATCGCAATCGCAG 14 495 498 Antisense
AATCGCAGGCTCTGAAATCTCTTCA 220 169 515 Antisense
TCAACTGTTCTACTCTTTAATTTTC 186 631 543 Antisense
CCAAACCGCAATTCCCTGTGTTTTG 439 275 567 Antisense
GATGTATCTGCCTGCTGGGATTATT 21 411 591 Antisense
CACTTCTTTCCATCACTATAGCAAT 442 197 659 Antisense
Sequence Source Affymetrix Proprietary Database