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[177529_at]

Description C27H6.3 /REP_DB=WormBase Gene ID /WP=CE08427 /TR=O17608 /GB=CAB02794.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 04      6grp_total > 97      4grp_total > 05      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 167.2
(-0.7)
P 		169.9
(-0.5)
P 		117.9
(-3)
A 		244.9
(3)
P 		127
B 211.2
(3)
P 		153.4
(-3)
P 		170.9
(-1.2)
P 		207.7
(2.6)
P 		58
C 200.2
(-0.9)
P 		155.7
(-3)
A 		175.9
(-2)
P 		280.2
(3)
P 		125
avr 192.9
(-0.4) 		159.7
(-2.7) 		154.9
(-3) 		244.3
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 477
1 2 3 4 5 6 range
A 51.5
(-3)
A 		165.6
(-1.5)
P 		123.7
(-2)
P 		222.3
(-0.7)
P 		378.4
(1.4)
P 		496
(3)
P 		445
B 117.3
(-3)
A 		135.4
(-2.7)
P 		150.8
(-2.4)
P 		184.9
(-1.8)
P 		430.5
(2.5)
P 		457.9
(3)
P 		341
C 162.8
(-2.4)
P 		124.5
(-3)
A 		126.1
(-3)
A 		253.5
(-1.1)
P 		328.9
(0)
P 		528.9
(3)
P 		404
avr 110.5
(-3) 		141.8
(-2.5) 		133.5
(-2.6) 		220.2
(-1.3) 		379.3
(1.2) 		494.3
(3) 		384
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 60.9
(3)
P 		36.9
(-1.8)
P 		30.8
(-3)
A 		35.8
(-2)
P 		30
B 67.4
(3)
P 		37.9
(-3)
P 		39.6
(-2.7)
P 		44.3
(-1.7)
P 		30
C 66.3
(3)
P 		44.8
(-3)
A 		61.3
(1.6)
P 		47.3
(-2.3)
P 		22
avr 64.9
(3) 		39.9
(-3) 		43.9
(-2) 		42.5
(-2.4) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 9.5
(-3)
A 		58.9
(-0.3)
P 		26.9
(-2.1)
P 		56.4
(-0.5)
P 		114.2
(2.6)
P 		120.8
(3)
P 		111
B 40.8
(-2.8)
A 		45.1
(-2.6)
P 		36.6
(-3)
P 		49
(-2.5)
P 		174.9
(3)
P 		170.7
(2.8)
P 		138
C 60.3
(-1.8)
P 		38
(-2.8)
A 		32.1
(-3)
A 		51
(-2.2)
P 		106.4
(0.1)
P 		177
(3)
P 		145
avr 36.9
(-2.8) 		47.3
(-2.3) 		31.9
(-3) 		52.1
(-2) 		131.8
(1.8) 		156.2
(3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177529_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11654
Sequence Type Exemplar sequence
Representative Public ID C27H6.3 NCBI
Target Description C27H6.3 /REP_DB=WormBase Gene ID /WP=CE08427 /TR=O17608 /GB=CAB02794.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073167(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073167 NCBI Caenorhabditis elegans C27H6.3 (C27H6.3) mRNA, complete cds. 10/11 A 
SNAP00000032973 ENSEMBL cdna:SNAP chromosome:CEL140:V:9985462:9986467:1 9/11 None
GENEFINDER00000032978 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9983983:9986467:1 10/11 None
C27H6.3 ENSEMBL cdna:known chromosome:CEL140:V:9983918:9986467:1 gene:C27H6.3 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032972 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9983982-9986078(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27H6.3
Entrez Gene 179389 Entrez gene
SwissProt O17608 EMBL-EBI
WormBase CE31321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02794 Hypothetical protein C27H6.3 [Caenorhabditis elegans] ref|NP_505568.2| C27H6.3 [Caenorhabditis elegans] 0.0
blast CAE72293 Hypothetical protein CBG19423 [Caenorhabditis briggsae] 0.0
blast CAB02794 Hypothetical protein C27H6.3 [Caenorhabditis elegans] ref|NP_505568.2| C27H6.3 [Caenorhabditis elegans] 1.0E-154
blast CAE72293 Hypothetical protein CBG19423 [Caenorhabditis briggsae] 1.0E-115
blast XP_415017 PREDICTED: similar to chromosome 20 open reading frame 72 [Gallus gallus] 4.0E-11
blast XP_415017 PREDICTED: similar to chromosome 20 open reading frame 72 [Gallus gallus] 5.0E-11
Sequence
Target Sequence 
>C. ELEGANS:177529_AT
acaactccgtaatcaagtctatcgtttagaatcatctataaatcagatcatgtctcgaaa
atgcacaattcgctacggaacctcaataatgccaagttttgcgaagctcatagatgttgc
tcctccaacggaagcggaatttaataatccgtgcctatttcccgagaaacgaattgctga
gaattctgagacttcaactctccgacgaccttttctttcagcaatcctttctgcgatcag
tgaccaaaaagcattatatttgtggcagaaagcaaaaattgacgaaatgggattgagtgc
attcaaatcaagtatgacggaaagaatgtcactgggaaccaaaactcatacaaaagttga
agagatgctaaaattaggacaccacgagtcaaaattgaataatcttatcgataatgagaa
aaatgctgctatcagaaatttcatgaaaagtgcaatgcccgttattctggaaatacagga
tccgcagaatgcaatttgtgagaagaaagtcaggcatccaacattggcgtatcaaggaag
atttgatgcagttgtcaagtacaagttggtgacgcggacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACTCCGTAATCAAGTCTATCGT 532 111 1092 Antisense
AATGCACAATTCGCTACGGAACCTC 240 151 1151 Antisense
CTACGGAACCTCAATAATGCCAAGT 45 227 1164 Antisense
GAAGCTCATAGATGTTGCTCCTCCA 127 343 1194 Antisense
GTTGCTCCTCCAACGGAAGCGGAAT 631 437 1207 Antisense
TTTAATAATCCGTGCCTATTTCCCG 155 1 1231 Antisense
CCTTTTCTTTCAGCAATCCTTTCTG 370 269 1300 Antisense
GCAATCCTTTCTGCGATCAGTGACC 86 323 1312 Antisense
TGCAATGCCCGTTATTCTGGAAATA 537 573 1542 Antisense
GAAAGTCAGGCATCCAACATTGGCG 265 361 1596 Antisense
CAAGTACAAGTTGGTGACGCGGACG 247 183 1647 Antisense
Sequence Source Affymetrix Proprietary Database