[Home] | [Total List]

[177528_at]

Description F15D3.6 /REP_DB=WormBase Gene ID /WP=CE15853 /TR=O62173 /GB=CAB02955.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 70      6grp_total > 27      4grp_total > 02      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 118.2
(-2.6)
P 		99.4
(-3)
P 		145.8
(-2.1)
P 		412.1
(3)
P 		313
B 158.4
(-2.6)
P 		142.2
(-3)
P 		165
(-2.4)
P 		366.9
(3)
P 		225
C 164.4
(-2.9)
P 		178.8
(-2.5)
P 		160.6
(-3)
P 		385.9
(3)
P 		225
avr 147
(-2.8) 		140.1
(-3) 		157.1
(-2.6) 		388.3
(3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 449
1 2 3 4 5 6 range
A 354.1
(1.6)
P 		130.8
(-2.4)
P 		300.5
(0.6)
P 		94.9
(-3)
P 		433.1
(3)
P 		128.2
(-2.4)
P 		338
B 497.2
(3)
P 		421.5
(0.2)
P 		348.4
(-2.5)
P 		383.4
(-1.2)
P 		334.7
(-3)
P 		370
(-1.7)
P 		163
C 140
(-2.7)
P 		544.3
(3)
P 		122.2
(-3)
P 		286.1
(-0.7)
P 		129.6
(-2.9)
P 		356.5
(0.3)
P 		422
avr 330.4
(1.1) 		365.5
(3) 		257
(-2.9) 		254.8
(-3) 		299.1
(-0.6) 		284.9
(-1.4) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 43
(0.3)
P 		21.6
(-3)
P 		38.1
(-0.4)
P 		60.3
(3)
P 		39
B 50.5
(-0.9)
P 		35.1
(-3)
P 		38.2
(-2.6)
P 		78.2
(3)
P 		43
C 54.4
(-1.7)
P 		51.4
(-3)
P 		56
(-1)
P 		65.1
(3)
P 		14
avr 49.3
(-0.5) 		36
(-3) 		44.1
(-1.5) 		67.9
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 65.3
(-0.7)
P 		46.5
(-1.7)
P 		65.5
(-0.7)
P 		24.1
(-3)
P 		130.7
(3)
P 		31.2
(-2.6)
P 		107
B 173
(3)
P 		140.3
(0.8)
P 		84.6
(-3)
P 		101.5
(-1.9)
P 		136
(0.5)
P 		138
(0.6)
P 		88
C 51.9
(-2.1)
P 		166.1
(3)
P 		31.1
(-3)
P 		57.5
(-1.8)
P 		41.9
(-2.5)
P 		119.3
(0.9)
P 		135
avr 96.7
(0.8) 		117.6
(3) 		60.4
(-3) 		61
(-2.9) 		102.9
(1.5) 		96.2
(0.8) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177528_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.785
Sequence Type Exemplar sequence
Representative Public ID F15D3.6 NCBI
Target Description F15D3.6 /REP_DB=WormBase Gene ID /WP=CE15853 /TR=O62173 /GB=CAB02955.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060551 NCBI Caenorhabditis elegans F15D3.6 (F15D3.6) mRNA, complete cds. 11/11 None
GENEFINDER00000000123 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11580542:11585581:-1 11/11 None
F15D3.6 ENSEMBL cdna:known chromosome:CEL140:I:11580243:11585610:-1 gene:F15D3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000121 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11580472-11585512(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15D3.6
Entrez Gene 173040 Entrez gene
SwissProt O62173 EMBL-EBI
WormBase CE15853 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1600868_AT similar to Protein C20orf45 cfa
CANINE_2:CFA.7767.1.S1_AT similar to Protein C20orf45 cfa
CANINE_2:CFAAFFX.19003.1.S1_S_AT similar to Protein C20orf45 cfa
DROSOPHILA_2:1637285_S_AT slowmo dm
DROSGENOME1:152577_AT slowmo dm
CHICKEN:GGA.9900.2.S1_AT similar to Protein C20orf45 (CGI-107) gga
CHICKEN:GGAAFFX.12509.1.S1_S_AT similar to Protein C20orf45 (CGI-107) gga
HG-U133_PLUS_2:217851_S_AT chromosome 20 open reading frame 45 hs
HG-U133A:217851_S_AT chromosome 20 open reading frame 45 hs
HG-U133A_2:217851_S_AT chromosome 20 open reading frame 45 hs
HU35KSUBA:W01996_AT chromosome 20 open reading frame 45 hs
HU35KSUBC:RC_AA488433_AT chromosome 20 open reading frame 45 hs
HU35KSUBD:RC_H97159_AT chromosome 20 open reading frame 45 hs
U133_X3P:G7705609_3P_A_AT chromosome 20 open reading frame 45 hs
U133_X3P:HS.3945.0.A1_3P_A_AT chromosome 20 open reading frame 45 hs
HG-U133_PLUS_2:222441_X_AT chromosome 20 open reading frame 45 hs
HG-U133B:222441_X_AT chromosome 20 open reading frame 45 hs
HG-U95B:43519_S_AT chromosome 20 open reading frame 45 hs
HG-U95C:49833_AT chromosome 20 open reading frame 45 hs
HG-U95B:58565_AT chromosome 20 open reading frame 45 hs
HG-U133_PLUS_2:229835_S_AT Chromosome 20 open reading frame 45 hs
HG-U133B:229835_S_AT Chromosome 20 open reading frame 45 hs
U133_X3P:HS.3945.1.A1_3P_AT Chromosome 20 open reading frame 45 hs
MU11KSUBA:AA407013_RC_AT RIKEN cDNA 2310042G06 gene mm
MG-U74AV2:96871_AT RIKEN cDNA 2310042G06 gene mm
MOE430A:1448543_AT RIKEN cDNA 2310042G06 gene mm
MOUSE430A_2:1448543_AT RIKEN cDNA 2310042G06 gene mm
MOUSE430_2:1448543_AT RIKEN cDNA 2310042G06 gene mm
MU19KSUBC:TC39479_AT RIKEN cDNA 2310042G06 gene, mRNA (cDNA clone MGC:30391 IMAGE:4235395) mm
Protein Similarities
Method ID Description E-Value
blast CAB02955 Hypothetical protein F15D3.6 [Caenorhabditis elegans] ref|NP_492952.1| F15D3.6 [Caenorhabditis elegans] 1.0E-107
blast CAE69583 Hypothetical protein CBG15800 [Caenorhabditis briggsae] 3.0E-96
blast NP_001009543 hypothetical protein LOC494346 [Rattus norvegicus] gb|AAH60590.1| Similar to RIKEN cDNA 2310042G06 [Rattus norvegicus] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR006797 EMBL-EBI MSF1 1.1E-77
Sequence
Target Sequence 
>C. ELEGANS:177528_AT
gaatctggtctagcgaacacatttttgatcacgaatgggagacagtagcccaagcggcat
tccgaaaatatccaaatccgctgaatcgatcaataaccggaattgatgtggtcaaacaga
cacttgaagccggaaaaatactcacagaacgaattattcagtcgcattttagtattccaa
gttgggcgacgaagctcaccggcttctctggaacacaatattcacacgaatacacagtta
ttgatccgacgaggaaggaattctcattgacaaccagaaatttaaatggctcatcattcc
tgcgtgtcgacgaaaagctgacatatacaccggctcatgaggatccaaataaaacaattc
ttaaacaagatgttatagtcacaattacacttccagcattcgccgattattgtgaaaaaa
catttttaagcatttattcacaaaatgctaataagggtcgacaaggtgtggaatgggtga
ttgatcatttgaaaaaggagtacgaggcgatttctacaaaggtgagctccgaagtgcacg
aaatgtctgagaaggtgctccgatcatttggaacgacttcttcttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTGGTCTAGCGAACACATTTT 498 327 17 Antisense
GAGACAGTAGCCCAAGCGGCATTCC 221 393 55 Antisense
GAAAATATCCAAATCCGCTGAATCG 536 353 80 Antisense
ATTCAGTCGCATTTTAGTATTCCAA 65 13 172 Antisense
CCAAGTTGGGCGACGAAGCTCACCG 107 277 193 Antisense
TCATCATTCCTGCGTGTCGACGAAA 338 619 307 Antisense
AAAGCTGACATATACACCGGCTCAT 657 123 330 Antisense
TCACAATTACACTTCCAGCATTCGC 356 629 395 Antisense
GAGCTCCGAAGTGCACGAAATGTCT 41 387 540 Antisense
GAAGGTGCTCCGATCATTTGGAACG 416 335 567 Antisense
TCATTTGGAACGACTTCTTCTTCTT 373 619 580 Antisense
Sequence Source Affymetrix Proprietary Database