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[177527_at]

Description K05C4.4 /REP_DB=WormBase Gene ID /WP=CE19972 /TR=Q9XUU4 /GB=CAB04574.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 61.1
(3)
A 		19.8
(-1.8)
A 		9.3
(-3)
A 		20
(-1.8)
A 		52
B 41.5
(2.5)
A 		15.8
(-1.8)
A 		8.3
(-3)
A 		44.5
(3)
A 		36
C 15
(-3)
A 		19.1
(-2.5)
A 		64.3
(2.5)
A 		68.8
(3)
A 		54
avr 39.2
(1.8) 		18.2
(-3) 		27.3
(-0.9) 		44.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 19.6
(-3)
A 		24.6
(-2.3)
A 		54.2
(2.2)
A 		22.5
(-2.6)
A 		59.6
(3)
A 		22.3
(-2.6)
A 		40
B 12.8
(-2.9)
A 		76.8
(3)
A 		44
(-0)
A 		12
(-3)
A 		67
(2.1)
A 		40.6
(-0.4)
A 		65
C 13.7
(-1.9)
A 		48.7
(3)
A 		9.8
(-2.4)
A 		5.6
(-3)
A 		12.9
(-2)
A 		43.8
(2.3)
A 		43
avr 15.4
(-2.7) 		50
(3) 		36
(0.7) 		13.4
(-3) 		46.5
(2.4) 		35.6
(0.6) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22.2
(3)
A 		4.3
(-2.4)
A 		2.4
(-3)
A 		2.9
(-2.8)
A 		20
B 13.2
(3)
A 		3.9
(-1.9)
A 		1.9
(-3)
A 		9.5
(1)
A 		11
C 5
(-3)
A 		5.5
(-2.8)
A 		22.4
(3)
A 		11.6
(-0.7)
A 		17
avr 13.5
(3) 		4.6
(-3) 		8.9
(-0.1) 		8
(-0.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 3.6
(-3)
A 		8.7
(-0.9)
A 		11.8
(0.4)
A 		5.7
(-2.1)
A 		18
(3)
A 		5.4
(-2.3)
A 		14
B 4.5
(-2.7)
A 		25.6
(2.6)
A 		10.7
(-1.1)
A 		3.2
(-3)
A 		27.2
(3)
A 		15.1
(-0)
A 		24
C 5.1
(-1.3)
A 		14.9
(3)
A 		2.5
(-2.4)
A 		1.1
(-3)
A 		4.2
(-1.7)
A 		14.7
(2.9)
A 		14
avr 4.4
(-2.5) 		16.4
(3) 		8.3
(-0.7) 		3.3
(-3) 		16.5
(3) 		11.7
(0.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177527_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2524
Sequence Type Exemplar sequence
Representative Public ID K05C4.4 NCBI
Target Description K05C4.4 /REP_DB=WormBase Gene ID /WP=CE19972 /TR=Q9XUU4 /GB=CAB04574.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061163(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061163 NCBI Caenorhabditis elegans K05C4.4 (K05C4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000018549 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14743354:14745063:1 11/11 None
K05C4.4 ENSEMBL cdna:known chromosome:CEL140:I:14743354:14745063:1 gene:K05C4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018539 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14743284-14744994(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05C4.4
Entrez Gene 187019 Entrez gene
SwissProt Q9XUU4 EMBL-EBI
WormBase CE19972 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04574 Hypothetical protein K05C4.4 [Caenorhabditis elegans] ref|NP_493564.1| K05C4.4 [Caenorhabditis elegans] 0.0
blast CAE54895 Hypothetical protein F31C3.2b [Caenorhabditis elegans] emb|CAE54892.1| Hypothetical protein F31C3.2b [Caenorhabditis elegans] ref|NP_001021434.1| F31C3.2b [Caenorhabditis elegans] 1.0E-50
blast CAB07197 Hypothetical protein F31C3.2a [Caenorhabditis elegans] emb|CAB04268.1| Hypothetical protein F31C3.2a [Caenorhabditis elegans] ref|NP_001021433.1| F31C3.2a [Caenorhabditis elegans] 1.0E-50
Sequence
Target Sequence 
>C. ELEGANS:177527_AT
ttgagacgctcgcatcggagattgcggaagtcggtcaatacgtctcaacggtacaagata
tgtctgtattggatgtaattaccgtgaacagattgcttgaagtccgcccggacacattgg
atgtgagcggattctgttttaatcttgaaatcttccgatcgatcaatctggaaggtatta
agaaattcactgcccgggaccattgcttgaacagtctccgcaattttccttacctgccga
attgcacagttctcggcctttcaaacaacaatatcaaggaatttgcccgatcttttgcaa
cttattttttcaaaagaatcccgacgttgaagagaattgatgataaaccggaaaagatgg
caccactagctctggaagaacattttgaagatgaggataataaaccttccagcagcactt
ccagcagcttctggcgtcacatcagttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGACGCTCGCATCGGAGATTGC 633 705 821 Antisense
GGAAGTCGGTCAATACGTCTCAACG 638 531 846 Antisense
AAGTCCGCCCGGACACATTGGATGT 303 157 920 Antisense
GGACCATTGCTTGAACAGTCTCCGC 86 523 1017 Antisense
TGAACAGTCTCCGCAATTTTCCTTA 606 573 1028 Antisense
TTTTCCTTACCTGCCGAATTGCACA 119 673 1044 Antisense
AGTTCTCGGCCTTTCAAACAACAAT 393 53 1068 Antisense
GAATTTGCCCGATCTTTTGCAACTT 96 325 1099 Antisense
AAAGATGGCACCACTAGCTCTGGAA 109 123 1173 Antisense
GATAATAAACCTTCCAGCAGCACTT 599 421 1216 Antisense
CAGCTTCTGGCGTCACATCAGTTAT 198 205 1245 Antisense
Sequence Source Affymetrix Proprietary Database