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[177526_at]

Description T26E4.6 /REP_DB=WormBase Gene ID /WP=CE16477 /TR=O45840 /GB=CAB03435.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 31      6grp_total > 61      4grp_total > 41      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 24.3
(-3)
A 		38.1
(-0.7)
P 		59.8
(3)
P 		30.2
(-2)
A 		36
B 23.5
(-3)
P 		77.2
(3)
M 		52
(0.2)
M 		51.7
(0.2)
A 		54
C 11.5
(-3)
A 		55.4
(3)
A 		38.1
(0.6)
P 		52.7
(2.6)
P 		44
avr 19.8
(-3) 		56.9
(3) 		50
(1.9) 		44.9
(1.1) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 26.7
(0.3)
A 		6.4
(-2.4)
A 		41.4
(2.2)
A 		1.8
(-3)
A 		47.1
(3)
A 		27
(0.3)
A 		45
B 20.8
(-1.1)
A 		27.5
(-0.3)
A 		54.5
(3)
P 		50.1
(2.5)
A 		35.7
(0.7)
A 		5.4
(-3)
A 		49
C 51.4
(1.8)
P 		43.6
(0.7)
A 		15
(-3)
A 		60.8
(3)
P 		27.3
(-1.4)
A 		16.8
(-2.8)
A 		46
avr 33
(1.7) 		25.8
(-0.3) 		37
(2.8) 		37.6
(3) 		36.7
(2.7) 		16.4
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 8.8
(-0.6)
A 		8.3
(-0.9)
P 		15.6
(3)
P 		4.4
(-3)
A 		11
B 7.5
(-3)
P 		19.1
(3)
M 		12
(-0.7)
M 		11
(-1.2)
A 		12
C 3.8
(-3)
A 		15.9
(3)
A 		13.3
(1.7)
P 		8.9
(-0.5)
P 		12
avr 6.7
(-3) 		14.4
(3) 		13.6
(2.4) 		8.1
(-1.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.9
(-1.1)
A 		2.3
(-2.2)
A 		9
(0.7)
A 		0.5
(-3)
A 		14.2
(3)
A 		6.6
(-0.3)
A 		14
B 7.2
(-0.5)
A 		9.2
(0.5)
A 		13.2
(2.4)
P 		13.3
(2.4)
A 		14.5
(3)
A 		2
(-3)
A 		13
C 19
(3)
P 		13.3
(0.8)
A 		3.8
(-3)
A 		12.2
(0.3)
P 		8.8
(-1)
A 		5.6
(-2.3)
A 		15
avr 10.4
(1.4) 		8.3
(-0.2) 		8.7
(0.1) 		8.7
(0.1) 		12.5
(3) 		4.7
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177526_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13376
Sequence Type Exemplar sequence
Representative Public ID T26E4.6 NCBI
Target Description T26E4.6 /REP_DB=WormBase Gene ID /WP=CE16477 /TR=O45840 /GB=CAB03435.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T26E4.6 ENSEMBL cdna:known chromosome:CEL140:V:15787513:15788596:-1 gene:T26E4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017592 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15787512-15788596(-) 100.0 100.0
Public Domain and Genome References
Ensembl T26E4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T25310 hypothetical protein T26E4.6 - Caenorhabditis elegans 1.0E-138
blast CAE17688 Hypothetical protein C08B6.12 [Caenorhabditis elegans] ref|NP_001023631.1| Serpentine Receptor, class XA family member (srxa-18) [Caenorhabditis elegans] 1.0E-92
blast CAB05515 Hypothetical protein F44G3.5 [Caenorhabditis elegans] ref|NP_507056.2| Serpentine Receptor, class XA family member (srxa-16) [Caenorhabditis elegans] 4.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
T26E4.6 4 67-84,123-142,163-185,200-219
Sequence
Target Sequence 
>C. ELEGANS:177526_AT
ggatggatcatacttttcttccgccaaatgatcataattcttccgaacgactgttatttc
aaaatggatctcgaccaatttcaagttacagctgtttgtgagaatctggaaaatcatcaa
cttcgtatgaaaattaattctgcgatgagcgatatcatacacatgtttatgccttgggcc
tcagttttcatgaatttaattgtgttcgcttgcattaaattcagaaatcgaaaaagtcaa
atgattggaagaagtggtgaaaagactatggttattaattcgttagcagtgtcgcttctg
ttaaccacaaactatgtttataacaagttttacacaatgctcaagccgacaatctcccag
cagtccgatgaacttcagtccgccctcagcttcttcaacctgtacgggtgttcatgcttc
aatcttctcgtttattttgttctagaccccacaaatcggcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGGATCATACTTTTCTTCCGCC 313 515 247 Antisense
GATCATAATTCTTCCGAACGACTGT 513 419 276 Antisense
GGATCTCGACCAATTTCAAGTTACA 670 511 312 Antisense
TACACATGTTTATGCCTTGGGCCTC 153 643 404 Antisense
GTGTCGCTTCTGTTAACCACAAACT 180 483 535 Antisense
ACAATGCTCAAGCCGACAATCTCCC 605 113 580 Antisense
AGCAGTCCGATGAACTTCAGTCCGC 58 79 605 Antisense
CAGCTTCTTCAACCTGTACGGGTGT 147 203 633 Antisense
TGTACGGGTGTTCATGCTTCAATCT 533 559 647 Antisense
GCTTCAATCTTCTCGTTTATTTTGT 405 303 662 Antisense
GTTCTAGACCCCACAAATCGGCAAA 359 443 685 Antisense
Sequence Source Affymetrix Proprietary Database