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[177525_s_at]

Description R155.2 /REP_DB=WormBase Gene ID /WP=CE12864 /TR=O01924 /GB=AAB54272.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 48.9
(3)
A 		19
(-1.5)
A 		9.4
(-3)
A 		20
(-1.4)
A 		40
B 39.8
(-2.1)
A 		120.7
(3)
A 		26
(-3)
A 		81.3
(0.5)
A 		95
C 11.7
(-3)
A 		80
(2.9)
A 		31.4
(-1.3)
A 		81.2
(3)
A 		70
avr 33.5
(-1.7) 		73.2
(3) 		22.3
(-3) 		60.8
(1.5) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 17.5
(-2.7)
A 		10.2
(-3)
A 		43.8
(-1.7)
A 		29.8
(-2.3)
A 		118.2
(1.1)
A 		169.7
(3)
A 		160
B 64.1
(0)
A 		41.6
(-1.3)
A 		12.5
(-3)
A 		84.4
(1.2)
A 		50.6
(-0.8)
A 		115
(3)
A 		103
C 5.1
(-3)
A 		44.3
(-1.7)
A 		7.9
(-2.9)
A 		10.1
(-2.8)
A 		109.6
(0.4)
A 		189.1
(3)
A 		184
avr 28.9
(-2.7) 		32
(-2.5) 		21.4
(-3) 		41.4
(-2.1) 		92.8
(0.1) 		157.9
(3) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 17.8
(3)
A 		4.1
(-2.3)
A 		2.4
(-3)
A 		2.9
(-2.8)
A 		15
B 12.7
(-1.3)
A 		29.8
(3)
A 		6
(-3)
A 		17.3
(-0.2)
A 		24
C 3.9
(-3)
A 		23
(3)
A 		11
(-0.8)
A 		13.7
(0.1)
A 		19
avr 11.5
(-0.6) 		19
(3) 		6.5
(-3) 		11.3
(-0.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 3.2
(-3)
A 		3.6
(-2.9)
A 		9.5
(-2)
A 		7.6
(-2.3)
A 		35.7
(2.1)
A 		41.3
(3)
A 		38
B 22.3
(-0.1)
A 		13.9
(-1.4)
A 		3
(-3)
A 		22.4
(-0.1)
A 		20.5
(-0.4)
A 		42.9
(3)
A 		40
C 1.9
(-3)
A 		13.5
(-1.9)
A 		2
(-3)
A 		2
(-3)
A 		35.5
(0.3)
A 		63.3
(3)
A 		61
avr 9.1
(-2.4) 		10.3
(-2.3) 		4.8
(-3) 		10.7
(-2.2) 		30.6
(0.5) 		49.2
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177525_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8250
Sequence Type Exemplar sequence
Representative Public ID R155.2 NCBI
Target Description R155.2 /REP_DB=WormBase Gene ID /WP=CE12864 /TR=O01924 /GB=AAB54272.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065083(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065083 NCBI Caenorhabditis elegans R155.2 (R155.2) mRNA, complete cds. 11/11 None
SNAP00000032919 ENSEMBL cdna:SNAP chromosome:CEL140:III:1963647:1970844:-1 11/11 None
GENEFINDER00000032923 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1963647:1970446:-1 11/11 None
R155.2 ENSEMBL cdna:known chromosome:CEL140:III:1963554:1970446:-1 gene:R155.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1963646-1970446(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R155.2
Entrez Gene 175340 Entrez gene
SwissProt O01924 EMBL-EBI
WormBase CE12864 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54272 Hypothetical protein R155.2 [Caenorhabditis elegans] ref|NP_497484.1| R155.2 [Caenorhabditis elegans] 0.0
blast AAC67419 Hypothetical protein C08G5.1 [Caenorhabditis elegans] ref|NP_493799.2| C08G5.1 [Caenorhabditis elegans] 0.0
blast AAK29873 Hypothetical protein Y22D7AR.2 [Caenorhabditis elegans] ref|NP_497449.1| Y22D7AR.2 [Caenorhabditis elegans] 1.0E-175
blast AAK29873 Hypothetical protein Y22D7AR.2 [Caenorhabditis elegans] ref|NP_497449.1| Y22D7AR.2 [Caenorhabditis elegans] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.5E-34
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.0E-54
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.9E-34
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.0E-54
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.5E-34
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.0E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497484.1 1 864-886
R155.2 1 864-886
SNAP00000032919 1 853-875
GENEFINDER00000032923 1 849-871
Sequence
Target Sequence 
>C. ELEGANS:177525_S_AT
gaattgaacgccgcactttgtgcatcacttttggcgacggtgtgcaattgacagtaactc
ataatttgatgtcgtcctggacctatctgaatactcagaagacaacgatttccattattt
cattgattcaatacttgaataaatgcaaaggtgccccgattgtcattcacgaccatgacg
gaatttcgagatctgccacaattccagcttcgattattggctatcaaaagattgcggaga
cctctggagcatttgtacttactgatgtgattgattacattcgtgagcatcgtgcacttg
cgatttctacacctggtgaactttcgtatatcgatgcagtgattgtcagattgcttgcaa
ttcaattcaaagaccaattctcgaaggaacaaacggaaatgtgcaaaagcattgcaattt
tcttctcggtctactcgccacgcgtgcatgaaacaatcctagatggcttgcagaaaaaga
ctggaggagataaactgcctgaaattgtggtgcctacgaaggaaagaagcttcatgacac
tcgcatcttccttacactcgctcaaagatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGAACGCCGCACTTTGTGCAT 268 323 3326 Antisense
GCATCACTTTTGGCGACGGTGTGCA 515 307 3347 Antisense
GTCGTCCTGGACCTATCTGAATACT 337 471 3396 Antisense
ATGCAAAGGTGCCCCGATTGTCATT 42 45 3468 Antisense
TCGAGATCTGCCACAATTCCAGCTT 573 601 3511 Antisense
AGACCTCTGGAGCATTTGTACTTAC 689 69 3563 Antisense
GAGCATCGTGCACTTGCGATTTCTA 520 389 3610 Antisense
AGCATTGCAATTTTCTTCTCGGTCT 86 79 3733 Antisense
TCTACTCGCCACGCGTGCATGAAAC 667 613 3755 Antisense
GAAGCTTCATGACACTCGCATCTTC 571 341 3851 Antisense
TCTTCCTTACACTCGCTCAAAGATG 149 617 3871 Antisense
Sequence Source Affymetrix Proprietary Database