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[177523_at]

Description T24C2.5 /REP_DB=WormBase Gene ID /WP=CE03719 /TR=Q22728 /GB=CAA92203.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      4grp_high_8_8 > 02      6grp_total > 83      4grp_total > 14      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 437.8
(2.8)
P 		202.3
(-3)
P 		255.6
(-1.7)
P 		445.2
(3)
P 		243
B 389.4
(0.6)
P 		211.1
(-3)
A 		243.5
(-2.3)
P 		505
(3)
P 		294
C 353
(1.2)
P 		251.3
(-2.2)
A 		228
(-3)
P 		407
(3)
P 		179
avr 393.4
(1.5) 		221.6
(-3) 		242.4
(-2.5) 		452.4
(3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 384
1 2 3 4 5 6 range
A 156.1
(-3)
A 		287.5
(-0.6)
P 		267.6
(-1)
P 		411.2
(1.6)
P 		487.8
(3)
P 		352.1
(0.5)
P 		332
B 179.1
(-3)
A 		251.9
(-1.8)
P 		314.9
(-0.7)
P 		357.2
(-0)
P 		539.9
(3)
P 		289.6
(-1.2)
P 		361
C 163.5
(-3)
P 		238.2
(-1.5)
P 		351.8
(0.7)
P 		466.2
(3)
P 		423.2
(2.1)
P 		371.9
(1.1)
P 		303
avr 166.2
(-3) 		259.2
(-1.2) 		311.4
(-0.3) 		411.5
(1.6) 		483.6
(3) 		337.9
(0.2) 		317
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 159.4
(3)
P 		43.9
(-3)
P 		66.8
(-1.8)
P 		65.2
(-1.9)
P 		116
B 124.2
(3)
P 		52.1
(-3)
A 		56.4
(-2.6)
P 		107.6
(1.6)
P 		72
C 116.8
(3)
P 		72.3
(-2.5)
A 		79.5
(-1.6)
P 		68.6
(-3)
P 		48
avr 133.5
(3) 		56.1
(-3) 		67.6
(-2.1) 		80.5
(-1.1) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 28.8
(-3)
A 		102.2
(0.7)
P 		58.3
(-1.5)
P 		104.3
(0.8)
P 		147.2
(3)
P 		85.7
(-0.1)
P 		118
B 62.3
(-3)
A 		83.8
(-2.2)
P 		76.5
(-2.5)
P 		94.6
(-1.8)
P 		219.3
(3)
P 		108
(-1.3)
P 		157
C 60.6
(-3)
P 		72.7
(-2)
P 		89.5
(-0.7)
P 		93.8
(-0.4)
P 		136.9
(3)
P 		124.5
(2)
P 		76
avr 50.6
(-3) 		86.2
(-1.2) 		74.8
(-1.8) 		97.6
(-0.6) 		167.8
(3) 		106.1
(-0.2) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177523_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17311
Sequence Type Exemplar sequence
Representative Public ID T24C2.5 NCBI
Target Description T24C2.5 /REP_DB=WormBase Gene ID /WP=CE03719 /TR=Q22728 /GB=CAA92203.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078017 NCBI Caenorhabditis elegans T24C2.5 (T24C2.5) mRNA, complete cds. 11/11 None
GENEFINDER00000015290 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14537823:14539251:1 11/11 None
T24C2.5 ENSEMBL cdna:known chromosome:CEL140:X:14537823:14539251:1 gene:T24C2.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015284 1/11 Cross Hyb Matching Probes None
SNAP00000015285 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14537822-14539251(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24C2.5
Entrez Gene 188842 Entrez gene
SwissProt Q22728 EMBL-EBI
WormBase CE03719 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92203 Hypothetical protein T24C2.5 [Caenorhabditis elegans] ref|NP_510418.1| T24C2.5 [Caenorhabditis elegans] 6.0E-59
blast CAE63187 Hypothetical protein CBG07534 [Caenorhabditis briggsae] 4.0E-39
Sequence
Target Sequence 
>C. ELEGANS:177523_AT
cagccacgtcaacggaccagaactaatacagtacagcttgcaccgaaagttgctccaggc
aaagaaagcacatctcttgattctctccttgacaaacaccaaaaaatgttgatgttacgc
agtcgccggcaagagtccagatgcaagcgccgcagttacacgtacttggcctcacgatgc
cccgcaatcactgaaattgatgaggacgagaacgaagatgacacgaatcttggaatggcg
caggaatttacaaccagcactaatcaagcggccgtcatcgcctcaataccggcaattcaa
gaggtttcggacgacgaataccaaacacgctctattgaagtgtcagattcaacatcatcc
tcttcttctagatcgaagaagaaaagtgtactttccttcattaatgaatgggtcagaagt
cgttctttccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCCACGTCAACGGACCAGAACTA 149 203 73 Antisense
GCTTGCACCGAAAGTTGCTCCAGGC 624 305 108 Antisense
GAAAGCACATCTCTTGATTCTCTCC 582 359 136 Antisense
GATTCTCTCCTTGACAAACACCAAA 144 429 151 Antisense
AATGTTGATGTTACGCAGTCGCCGG 32 163 177 Antisense
GTCCAGATGCAAGCGCCGCAGTTAC 330 477 207 Antisense
GCCGCAGTTACACGTACTTGGCCTC 555 283 221 Antisense
GATGCCCCGCAATCACTGAAATTGA 405 413 248 Antisense
CAACCAGCACTAATCAAGCGGCCGT 28 187 323 Antisense
GACGACGAATACCAAACACGCTCTA 514 379 382 Antisense
TGGGTCAGAAGTCGTTCTTTCCGGA 637 553 481 Antisense
Sequence Source Affymetrix Proprietary Database