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[177522_at]

Description F37D6.6 /REP_DB=WormBase Gene ID /WP=CE24960 /TR=Q9N638 /GB=CAB70221.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 06      4grp_high_8_8 > 34      6grp_total > 05      4grp_total > 46      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 305.2
(3)
P 		160.9
(-0.4)
A 		49.1
(-3)
A 		139.2
(-0.9)
P 		256
B 261.1
(3)
P 		183.3
(0.3)
P 		85.7
(-3)
A 		96.8
(-2.6)
P 		175
C 381.9
(3)
P 		178.1
(-1)
P 		119.4
(-2.1)
P 		73.8
(-3)
P 		308
avr 316.1
(3) 		174.1
(-0.7) 		84.7
(-3) 		103.3
(-2.5) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 309.8
(3)
P 		304.5
(2.9)
P 		197.2
(-0.2)
P 		136.6
(-1.9)
P 		215.2
(0.3)
P 		95.8
(-3)
P 		214
B 396.6
(3)
P 		214.4
(-0.5)
P 		182.9
(-1.1)
P 		201.4
(-0.8)
P 		98.8
(-2.8)
P 		87
(-3)
M 		310
C 456.2
(3)
P 		209.6
(-0.7)
P 		248.2
(-0.1)
P 		202.9
(-0.8)
P 		203.7
(-0.7)
P 		51.3
(-3)
A 		405
avr 387.5
(3) 		242.8
(0.2) 		209.4
(-0.5) 		180.3
(-1) 		172.6
(-1.2) 		78
(-3) 		310
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 111.1
(3)
P 		34.9
(-1.7)
A 		12.8
(-3)
A 		20.4
(-2.5)
P 		98
B 83.3
(3)
P 		45.3
(-0.6)
P 		19.9
(-3)
A 		20.6
(-2.9)
P 		63
C 126.4
(3)
P 		51.2
(-1)
P 		41.6
(-1.5)
P 		12.4
(-3)
P 		114
avr 106.9
(3) 		43.8
(-1.2) 		24.8
(-2.5) 		17.8
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 57.1
(-0.6)
P 		108.3
(3)
P 		42.9
(-1.6)
P 		34.7
(-2.2)
P 		64.9
(-0.1)
P 		23.3
(-3)
P 		85
B 138
(3)
P 		71.4
(-0.8)
P 		44.4
(-2.3)
P 		53.4
(-1.8)
P 		40.1
(-2.6)
P 		32.4
(-3)
M 		106
C 169.1
(3)
P 		64
(-1.2)
P 		63.2
(-1.2)
P 		40.8
(-2.1)
P 		65.9
(-1.1)
P 		17.2
(-3)
A 		152
avr 121.4
(3) 		81.2
(0.5) 		50.2
(-1.4) 		43
(-1.8) 		57
(-1) 		24.3
(-3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177522_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.787
Sequence Type Exemplar sequence
Representative Public ID F37D6.6 NCBI
Target Description F37D6.6 /REP_DB=WormBase Gene ID /WP=CE24960 /TR=Q9N638 /GB=CAB70221.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060345 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-68) (tag-68) mRNA, complete cds. 11/11 None
F37D6.6 ENSEMBL cdna:known chromosome:CEL140:I:10509721:10514010:1 gene:F37D6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029112 5/11 Cross Hyb Matching Probes None
GENEFINDER00000029133 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10509792-10513498(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-68
Ensembl F37D6.6
Entrez Gene 172930 Entrez gene
SwissProt Q9N638 EMBL-EBI
WormBase CE36156 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB70221 Hypothetical protein F37D6.6 [Caenorhabditis elegans] emb|CAB70215.2| Hypothetical protein F37D6.6 [Caenorhabditis elegans] ref|NP_492746.2| Temporarily Assigned Gene name family member (tag-68) [Caenorhabditis elegans] 0.0
blast CAE58961 Hypothetical protein CBG02231 [Caenorhabditis briggsae] 0.0
blast T21920 hypothetical protein F37D6.7 - Caenorhabditis elegans 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR003619 EMBL-EBI Dwarfin protein, domain A 1.8E-5
Sequence
Target Sequence 
>C. ELEGANS:177522_AT
accatcagttccaaatgcgactcctccactaccggatgattctccaccgtgtacatcaag
gagttcacaggatcctgatgatttgatacattatcatcatcacgagtcaaatcgatcttg
ggcaaaaatgacgaggtatgaacgaaaagaacaaatcggagataccgtatggctgcacgg
accttttgcagctgttggtgttttatcaaaatcagtacacgacgctcaactggaatgtag
tccgtgggatctgaaaaacgaggtctcattcgcattaatacggcaggccgatccaattgg
atcgacgaatccggaagatgtatggttatataatagtggaactcgcccattatttctatc
aatgactccaaatgtatcatcaacaaaagatactcttcgacggttatctcccggatactg
tatacgagttcatcgaggagaagtatctgcatctgcacccgcaagtgaacgaaccaaagt
gcggcggcccagcaaggaccctgcactggctcaacaaaacctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCATCAGTTCCAAATGCGACTCCT 92 87 711 Antisense
ACTACCGGATGATTCTCCACCGTGT 651 99 738 Antisense
GATACCGTATGGCTGCACGGACCTT 130 423 871 Antisense
CACGGACCTTTTGCAGCTGTTGGTG 234 197 886 Antisense
GAGGTCTCATTCGCATTAATACGGC 660 401 970 Antisense
TGGAACTCGCCCATTATTTCTATCA 542 547 1047 Antisense
AGATACTCTTCGACGGTTATCTCCC 143 67 1098 Antisense
GGAGAAGTATCTGCATCTGCACCCG 283 519 1147 Antisense
ATCTGCACCCGCAAGTGAACGAACC 304 29 1161 Antisense
TGAACGAACCAAAGTGCGGCGGCCC 402 519 1176 Antisense
CCTGCACTGGCTCAACAAAACCTGG 285 265 1210 Antisense
Sequence Source Affymetrix Proprietary Database