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[177518_at]

Description T28F3.9 /REP_DB=WormBase Gene ID /WP=CE20119 /TR=Q9XTM4 /GB=CAB05168.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 46.4
(0)
P 		10.7
(-3)
A 		46.8
(0.1)
A 		81.4
(3)
M 		71
B 62.1
(3)
P 		48.3
(-0.3)
A 		41.3
(-2)
P 		37.3
(-3)
P 		25
C 83.2
(3)
P 		15
(-3)
A 		25.1
(-2.1)
A 		48.3
(-0.1)
A 		68
avr 63.9
(3) 		24.7
(-3) 		37.7
(-1) 		55.7
(1.7) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 46
(3)
A 		14.9
(-1.2)
A 		44.8
(2.8)
A 		29.4
(0.8)
A 		40.1
(2.2)
A 		1.2
(-3)
A 		45
B 59.1
(3)
P 		37.1
(0.2)
A 		23.8
(-1.5)
A 		27.7
(-1)
A 		27.7
(-1)
P 		11.9
(-3)
A 		47
C 37.4
(1.4)
P 		45.7
(3)
A 		34.3
(0.9)
A 		18
(-2.2)
A 		24.4
(-1)
A 		13.8
(-3)
A 		32
avr 47.5
(3) 		32.6
(0.7) 		34.3
(0.9) 		25
(-0.5) 		30.7
(0.4) 		9
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 16.9
(3)
P 		2.3
(-3)
A 		12.2
(1.1)
A 		11.9
(0.9)
M 		15
B 19.8
(3)
P 		11.9
(-1)
A 		9.6
(-2.2)
P 		8
(-3)
P 		12
C 27.5
(3)
P 		4.3
(-3)
A 		8.8
(-1.8)
A 		8.2
(-2)
A 		23
avr 21.4
(3) 		6.2
(-3) 		10.2
(-1.4) 		9.4
(-1.7) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.5
(1.2)
A 		5.3
(-0.5)
A 		9.7
(1.8)
A 		7.4
(0.6)
A 		12.1
(3)
A 		0.3
(-3)
A 		12
B 20.6
(3)
P 		12.3
(-0.1)
A 		5.8
(-2.5)
A 		7.3
(-1.9)
A 		11.3
(-0.4)
P 		4.4
(-3)
A 		16
C 13.8
(2.9)
P 		13.9
(3)
A 		8.7
(-0)
A 		3.6
(-3)
A 		7.9
(-0.5)
A 		4.6
(-2.4)
A 		10
avr 14.3
(3) 		10.5
(1) 		8.1
(-0.3) 		6.1
(-1.4) 		10.4
(0.9) 		3.1
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177518_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9712
Sequence Type Exemplar sequence
Representative Public ID T28F3.9 NCBI
Target Description T28F3.9 /REP_DB=WormBase Gene ID /WP=CE20119 /TR=Q9XTM4 /GB=CAB05168.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070675(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070675 NCBI Caenorhabditis elegans T28F3.9 (T28F3.9) mRNA, complete cds. 11/11 A 
SNAP00000040190 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17310970:17311650:1 9/11 None
T28F3.9 ENSEMBL cdna:known chromosome:CEL140:IV:17308480:17311650:1 gene:T28F3.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17308485-17311656(+) 100.0 100.0
chrIV:16740136-16743046(+) 96.04 96.04
Public Domain and Genome References
Gene Title
Ensembl T28F3.9
Entrez Gene 189057 Entrez gene
SwissProt Q9XTM4 EMBL-EBI
WormBase CE20119 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8375 acetylglucosaminyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05303 Hypothetical protein T28F3.9 [Caenorhabditis elegans] emb|CAB05168.1| Hypothetical protein T28F3.9 [Caenorhabditis elegans] ref|NP_503076.1| T28F3.9 [Caenorhabditis elegans] 0.0
blast CAB63388 Hypothetical protein Y51H4A.25a [Caenorhabditis elegans] emb|CAB63368.1| Hypothetical protein Y51H4A.25a [Caenorhabditis elegans] ref|NP_001023481.1| Y51H4A.25a [Caenorhabditis elegans] 0.0
blast CAE61764 Hypothetical protein CBG05724 [Caenorhabditis briggsae] 1.0E-155
blast CAB05303 Hypothetical protein T28F3.9 [Caenorhabditis elegans] emb|CAB05168.1| Hypothetical protein T28F3.9 [Caenorhabditis elegans] ref|NP_503076.1| T28F3.9 [Caenorhabditis elegans] 4.0E-63
blast CAB63388 Hypothetical protein Y51H4A.25a [Caenorhabditis elegans] emb|CAB63368.1| Hypothetical protein Y51H4A.25a [Caenorhabditis elegans] ref|NP_001023481.1| Y51H4A.25a [Caenorhabditis elegans] 2.0E-62
blast CAE61765 Hypothetical protein CBG05725 [Caenorhabditis briggsae] 7.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 5.3E-75
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503076.1 1 45-67
T28F3.9 1 45-67
Sequence
Target Sequence 
>C. ELEGANS:177518_AT
agtggatatgttcaagcttcactgtcaagagcagctgttgaatggttaatcaatacagtg
gatttaacattattcatcaaccagtttgatcgaacgaaatatggcggagacgagcagctg
atttccagttttcaagtgaattcacaatttgaaatgcctggacactttacggatgagtgt
tccaaatatcgttatgggcatgatcaaatctcaaggatgactcaatggtctggcggtgat
gtaaaaaggtgtgcctcaaaaaccatacgtcatgggatttgtctgatcggaattgaagat
ttcagagctgtttctgaaatgccggttattatgtttaataagatgctgccatcgttcgac
tattccataattgattgtacagctgaactcctttttaatcgaacgtttttgaatcagaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGGATATGTTCAAGCTTCACTGT 297 59 1003 Antisense
AAGGATGACTCAATGGTCTGGCGGT 531 159 1215 Antisense
GACTCAATGGTCTGGCGGTGATGTA 606 373 1221 Antisense
ATGGTCTGGCGGTGATGTAAAAAGG 565 45 1227 Antisense
TCTGAAATGCCGGTTATTATGTTTA 521 607 1315 Antisense
ATAAGATGCTGCCATCGTTCGACTA 594 25 1340 Antisense
GCCATCGTTCGACTATTCCATAATT 183 281 1350 Antisense
GACTATTCCATAATTGATTGTACAG 300 373 1360 Antisense
GATTGTACAGCTGAACTCCTTTTTA 85 435 1375 Antisense
GCTGAACTCCTTTTTAATCGAACGT 156 295 1384 Antisense
TAATCGAACGTTTTTGAATCAGACA 66 561 1398 Antisense
Sequence Source Affymetrix Proprietary Database