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[177516_at]

Description T21C9.9 /REP_DB=WormBase Gene ID /WP=CE06478 /TR=Q22644 /GB=CAA97336.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 57      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 50.6
(-3)
A 		237.2
(3)
P 		233.4
(2.9)
P 		71.8
(-2.3)
A 		187
B 59.5
(-2.8)
A 		280.8
(2.5)
P 		300.7
(3)
P 		51.9
(-3)
A 		249
C 87.9
(-2.8)
A 		243.1
(1.7)
P 		289.2
(3)
P 		81.1
(-3)
A 		208
avr 66
(-3) 		253.7
(2.4) 		274.4
(3) 		68.3
(-2.9) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 71.1
(-3)
A 		157.5
(1.8)
P 		71
(-3)
A 		107
(-1)
A 		93
(-1.8)
A 		179.4
(3)
A 		108
B 78
(-2.3)
A 		156.1
(3)
A 		90
(-1.5)
A 		67.6
(-3)
A 		127.5
(1.1)
A 		91.9
(-1.4)
A 		89
C 54.4
(-3)
A 		125.8
(3)
A 		116.9
(2.3)
A 		55.7
(-2.9)
A 		75.8
(-1.2)
A 		101.4
(0.9)
A 		71
avr 67.8
(-3) 		146.5
(3) 		92.6
(-1.1) 		76.8
(-2.3) 		98.8
(-0.6) 		124.2
(1.3) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 18.4
(-2.1)
A 		51.5
(1.9)
P 		61
(3)
P 		10.5
(-3)
A 		51
B 19
(-2.2)
A 		69.4
(3)
P 		69.7
(3)
P 		11.1
(-3)
A 		59
C 29.1
(-1.9)
A 		69.9
(0.9)
P 		100.8
(3)
P 		13.7
(-3)
A 		87
avr 22.2
(-2) 		63.6
(1.8) 		77.2
(3) 		11.8
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 13.1
(-3)
A 		56
(3)
P 		15.5
(-2.7)
A 		27.1
(-1)
A 		28.1
(-0.9)
A 		43.7
(1.3)
A 		43
B 27.2
(-1.4)
A 		52
(3)
A 		21.9
(-2.3)
A 		17.9
(-3)
A 		51.8
(3)
A 		34.3
(-0.1)
A 		34
C 20.2
(-1)
A 		38.4
(3)
A 		29.8
(1.1)
A 		11.2
(-3)
A 		24.5
(-0.1)
A 		33.9
(2)
A 		27
avr 20.2
(-2.7) 		48.8
(3) 		22.4
(-2.3) 		18.7
(-3) 		34.8
(0.2) 		37.3
(0.7) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177516_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12152
Sequence Type Exemplar sequence
Representative Public ID T21C9.9 NCBI
Target Description T21C9.9 /REP_DB=WormBase Gene ID /WP=CE06478 /TR=Q22644 /GB=CAA97336.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073318 NCBI Caenorhabditis elegans T21C9.9 (T21C9.9) mRNA, complete cds. 11/11 None
SNAP00000011989 ENSEMBL cdna:SNAP chromosome:CEL140:V:10593421:10595158:-1 11/11 None
GENEFINDER00000012000 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10593421:10595158:-1 11/11 None
T21C9.9 ENSEMBL cdna:known chromosome:CEL140:V:10593191:10595161:-1 gene:T21C9.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10593947-10595158(-) 98.95 100.0
Public Domain and Genome References
Gene Title
Ensembl T21C9.9
Entrez Gene 179479 Entrez gene
SwissProt Q22644 EMBL-EBI
WormBase CE35020 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97336 Hypothetical protein T21C9.9 [Caenorhabditis elegans] ref|NP_505719.2| T21C9.9 [Caenorhabditis elegans] 1.0E-172
blast CAE64855 Hypothetical protein CBG09651 [Caenorhabditis briggsae] 1.0E-115
blast T25074 hypothetical protein T21C9.10 - Caenorhabditis elegans 2.0E-38
Sequence
Target Sequence 
>C. ELEGANS:177516_AT
tgactccgttcagacaaccgtattatcaaactgcttcttatccacagtaccaacaaggac
cagctcaatctcttcaacaaatgtatcaacttccaaatcctcgctacattcaaccacaag
ctcctcgcccacaatacatatcacgtcctgctcctcgtccagctcctgctccatatcaac
caccacgtgttcaagaaagaccgtatgttcagcctgctgctccagtagctgaacttgctg
aaactcgaaaaaatactcttcatgataacggatatggagaagaaattgaaagaacaactt
acactccagtggttactgctgctccagtatatgagactgatgcaccaactattgtcactc
aagctccagcagtggaagaagtaccagatttcgatgaaactccggtgaaaaagggagaga
aagatgaattttactatgcatattatgacgacaagggtaataaagttggagattcaagat
caggaacaacttttgcaccagaaaatgtaattgttgaagaggaggctactgttgctccag
ct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACTCCGTTCAGACAACCGTATTA 299 571 200 Antisense
AACCGTATTATCAAACTGCTTCTTA 260 147 215 Antisense
TGCTTCTTATCCACAGTACCAACAA 470 579 231 Antisense
TCCTCGCTACATTCAACCACAAGCT 608 591 297 Antisense
TCCATATCAACCACCACGTGTTCAA 537 587 369 Antisense
AGAAAGACCGTATGTTCAGCCTGCT 295 73 393 Antisense
TCAGCCTGCTGCTCCAGTAGCTGAA 327 625 408 Antisense
CTTACACTCCAGTGGTTACTGCTGC 499 217 497 Antisense
CTGATGCACCAACTATTGTCACTCA 85 239 536 Antisense
TTGTCACTCAAGCTCCAGCAGTGGA 654 707 551 Antisense
AGAGGAGGCTACTGTTGCTCCAGCT 98 69 717 Antisense
Sequence Source Affymetrix Proprietary Database