[Home] | [Total List]

[177515_at]

Description K04G2.7 /REP_DB=WormBase Gene ID /WP=CE06101 /TR=Q21226 /GB=CAB00044.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 48.8
(-3)
A 		248.1
(3)
P 		222.8
(2.2)
P 		77.9
(-2.1)
M 		199
B 39.5
(-3)
A 		299.8
(3)
P 		267.4
(2.3)
P 		69.4
(-2.3)
A 		260
C 106.4
(-3)
A 		276.4
(2.5)
P 		290.9
(3)
P 		148.3
(-1.6)
A 		185
avr 64.9
(-3) 		274.8
(3) 		260.4
(2.6) 		98.5
(-2) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1000
1 2 3 4 5 6 range
A 140.5
(-2.4)
P 		481.4
(-0.3)
P 		1029.8
(3)
P 		466.6
(-0.4)
P 		150.8
(-2.3)
P 		36.5
(-3)
A 		993
B 95.9
(-2.8)
P 		623.8
(0.8)
P 		948.8
(3)
P 		418.3
(-0.6)
P 		221.8
(-1.9)
P 		63.7
(-3)
M 		885
C 81.5
(-2.4)
P 		570.6
(3)
P 		568.4
(3)
P 		522.2
(2.5)
P 		182.7
(-1.3)
P 		30.3
(-3)
A 		540
avr 106
(-2.5) 		558.6
(0.8) 		849
(3) 		469
(0.2) 		185.1
(-1.9) 		43.5
(-3) 		806
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 17.8
(-2.2)
A 		53.9
(2.4)
P 		58.2
(3)
P 		11.4
(-3)
M 		47
B 12.6
(-3)
A 		74
(3)
P 		62
(1.8)
P 		14.8
(-2.8)
A 		61
C 35.2
(-2.2)
A 		79.5
(1.3)
P 		101.4
(3)
P 		25
(-3)
A 		76
avr 21.9
(-2.5) 		69.1
(2.5) 		73.9
(3) 		17.1
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 25.9
(-2.5)
P 		171.2
(1.5)
P 		224.3
(3)
P 		118.3
(0)
P 		45.5
(-2)
P 		8.9
(-3)
A 		215
B 33.4
(-2.7)
P 		207.6
(2.3)
P 		230.4
(3)
P 		110.8
(-0.5)
P 		90.1
(-1.1)
P 		23.8
(-3)
M 		207
C 30.2
(-2.3)
P 		174.1
(3)
P 		144.7
(1.9)
P 		105
(0.5)
P 		59.1
(-1.2)
P 		10.1
(-3)
A 		164
avr 29.8
(-2.5) 		184.3
(2.5) 		199.8
(3) 		111.4
(0.1) 		64.9
(-1.4) 		14.3
(-3) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177515_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1614
Sequence Type Exemplar sequence
Representative Public ID K04G2.7 NCBI
Target Description K04G2.7 /REP_DB=WormBase Gene ID /WP=CE06101 /TR=Q21226 /GB=CAB00044.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059815(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059815 NCBI Caenorhabditis elegans K04G2.7 (K04G2.7) mRNA, complete cds. 10/11 None
SNAP00000009075 ENSEMBL cdna:SNAP chromosome:CEL140:I:8055607:8056363:-1 10/11 None
K04G2.7 ENSEMBL cdna:known chromosome:CEL140:I:8055607:8056363:-1 gene:K04G2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009100 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8055537-8056294(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04G2.7
Entrez Gene 187007 Entrez gene
SwissProt Q21226 EMBL-EBI
WormBase CE38203 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00044 Hypothetical protein K04G2.7 [Caenorhabditis elegans] ref|NP_492216.2| K04G2.7 [Caenorhabditis elegans] 1.0E-140
blast CAB00044 Hypothetical protein K04G2.7 [Caenorhabditis elegans] ref|NP_492216.2| K04G2.7 [Caenorhabditis elegans] 1.0E-115
blast CAB00044 Hypothetical protein K04G2.7 [Caenorhabditis elegans] ref|NP_492216.2| K04G2.7 [Caenorhabditis elegans] 1.0E-111
blast CAE63706 Hypothetical protein CBG08223 [Caenorhabditis briggsae] 2.0E-77
blast CAE63706 Hypothetical protein CBG08223 [Caenorhabditis briggsae] 1.0E-58
blast CAE63706 Hypothetical protein CBG08223 [Caenorhabditis briggsae] 1.0E-57
Sequence
Target Sequence 
>C. ELEGANS:177515_AT
aatttgcggcttcgatgtctctgatcggtggattaatttgtttcggaagaaacatggaat
ccgatactttagtggacgccgccacgccgacaaaaaggataagacgataattctgtcggc
gttggatgtaacaaagatgaagacgactaactttctgaagaaacgaagaatattgcgaac
gagtcgaaaggaatatgctgatgtggatttacaagtcaataaagaaatcgtgagacgcca
aaataaaggcgagcgtctaacgaatccatggatcaaggagtatgctcaatatgttgccta
tcagttgcatccagaaataccggatattgcaaaattttttgatgcaaactggctttacag
attcaaacgtcgttactgtgtcgagttaaaggtggctttgaatgacttcctatatgatct
gaactcaatatttcagccaagaagtccagaagaaaatacaagatcaacgccacaaacaac
gtccaacgaggacataaaatcatcagccacctcaatggaagtggttacatctcctaacta
tttatttccacatcactatttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTGCGGCTTCGATGTCTCTGAT 20 175 33 Antisense
TCCGATACTTTAGTGGACGCCGCCA 513 593 92 Antisense
GATAATTCTGTCGGCGTTGGATGTA 155 423 138 Antisense
GAGCGTCTAACGAATCCATGGATCA 77 387 283 Antisense
GAGTATGCTCAATATGTTGCCTATC 165 399 310 Antisense
GTTGCCTATCAGTTGCATCCAGAAA 553 439 325 Antisense
GGTGGCTTTGAATGACTTCCTATAT 209 499 423 Antisense
TCAACGCCACAAACAACGTCCAACG 87 631 496 Antisense
GACATAAAATCATCAGCCACCTCAA 501 369 523 Antisense
GAAGTGGTTACATCTCCTAACTATT 571 333 550 Antisense
ATTTATTTCCACATCACTATTTCAA 414 15 572 Antisense
Sequence Source Affymetrix Proprietary Database