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[177512_at]

Description C34E7.3 /REP_DB=WormBase Gene ID /WP=CE03060 /TR=Q18458 /GB=CAA91794.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 86.3
(-2.1)
A 		78.7
(-3)
A 		104.6
(0.1)
A 		129.2
(3)
A 		51
B 125.1
(2.8)
A 		81.8
(-3)
A 		126.3
(3)
A 		122
(2.4)
A 		45
C 108.7
(2.9)
A 		83.4
(-3)
A 		109.3
(3)
A 		101.5
(1.2)
A 		26
avr 106.7
(1.2) 		81.3
(-3) 		113.4
(2.3) 		117.6
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 136.4
(2.9)
A 		120.5
(1.7)
A 		59.2
(-3)
A 		63.5
(-2.7)
A 		115.8
(1.3)
A 		138
(3)
A 		79
B 123.8
(2)
A 		74.5
(-2.7)
A 		71.6
(-3)
A 		125.1
(2.2)
A 		101.7
(-0.1)
A 		133.8
(3)
A 		62
C 118.4
(-0.1)
A 		80.7
(-2.4)
A 		71.8
(-3)
A 		151.7
(1.9)
A 		148.8
(1.8)
A 		168.7
(3)
A 		97
avr 126.2
(1.4) 		91.9
(-1.2) 		67.5
(-3) 		113.4
(0.5) 		122.1
(1.1) 		146.8
(3) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 31.4
(3)
A 		17.1
(-3)
A 		27.4
(1.3)
A 		18.9
(-2.2)
A 		14
B 39.9
(3)
A 		20.2
(-3)
A 		29.3
(-0.2)
A 		26
(-1.2)
A 		20
C 36
(2.4)
A 		24
(-1)
A 		38.1
(3)
A 		17.1
(-3)
A 		21
avr 35.8
(3) 		20.4
(-3) 		31.6
(1.4) 		20.7
(-2.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 25.1
(-0.6)
A 		42.9
(3)
A 		12.9
(-3)
A 		16.1
(-2.4)
A 		34.9
(1.4)
A 		33.6
(1.1)
A 		30
B 43.1
(1.7)
A 		24.8
(-1.6)
A 		17.4
(-3)
A 		33.1
(-0.1)
A 		41.3
(1.4)
A 		49.9
(3)
A 		33
C 43.9
(1)
A 		24.6
(-2)
A 		18.3
(-3)
A 		30.5
(-1.1)
A 		48.1
(1.7)
A 		56.5
(3)
A 		38
avr 37.4
(1.2) 		30.8
(-0.1) 		16.2
(-3) 		26.6
(-1) 		41.4
(2) 		46.7
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177512_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17480
Sequence Type Exemplar sequence
Representative Public ID C34E7.3 NCBI
Target Description C34E7.3 /REP_DB=WormBase Gene ID /WP=CE03060 /TR=Q18458 /GB=CAA91794.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077747(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077747 NCBI Caenorhabditis elegans C34E7.3 (C34E7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000036182 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12930190:12931944:1 11/11 None
SNAP00000036178 ENSEMBL cdna:SNAP chromosome:CEL140:X:12931339:12931944:1 9/11 None
C34E7.3 ENSEMBL cdna:known chromosome:CEL140:X:12930255:12931944:1 gene:C34E7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12930838-12931944(+) 98.05 98.05
Public Domain and Genome References
Gene Title
Ensembl C34E7.3
Entrez Gene 183211 Entrez gene
SwissProt Q18458 EMBL-EBI
WormBase CE03060 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91794 Hypothetical protein C34E7.3 [Caenorhabditis elegans] ref|NP_510148.1| C34E7.3 [Caenorhabditis elegans] 1.0E-127
blast CAA91794 Hypothetical protein C34E7.3 [Caenorhabditis elegans] ref|NP_510148.1| C34E7.3 [Caenorhabditis elegans] 1.0E-114
blast CAE70369 Hypothetical protein CBG16928 [Caenorhabditis briggsae] 4.0E-91
blast CAA91794 Hypothetical protein C34E7.3 [Caenorhabditis elegans] ref|NP_510148.1| C34E7.3 [Caenorhabditis elegans] 9.0E-86
blast CAE70369 Hypothetical protein CBG16928 [Caenorhabditis briggsae] 2.0E-77
blast CAE70369 Hypothetical protein CBG16928 [Caenorhabditis briggsae] 1.0E-56
Sequence
Target Sequence 
>C. ELEGANS:177512_AT
aaggaggagctattccaacccattgccgccggtatgcgaaggtcttggtcgtgcgtggaa
ctcggtaacatcagctgccatgaaactactcaaacgaaaagggtatccttttcggtaact
gtttcacgtccagctcagcaagacattgaaaagacaacatatgatttgtgtcccccaaag
atttccgcccgacctattttggtccgtcgcaacaccaccttttccggtaaggacaaccta
gttcatatggattttgactcgttcaccgcatggagaagaggatctaaaatgagcgatgac
gtggagaagcaaagaaagaagagcatgaaagaaaaggaaaaagaggcaaatggtggatct
aggatgaagatcagaaaagatagtaatagttcgaagaaagaggatatggaacatggagat
tggtggattgtgagagttgcaaagatgggctttgaaagctgcttccaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAGGAGCTATTCCAACCCATTG 74 161 244 Antisense
CCCATTGCCGCCGGTATGCGAAGGT 515 257 262 Antisense
TCTTGGTCGTGCGTGGAACTCGGTA 643 615 286 Antisense
GGAACTCGGTAACATCAGCTGCCAT 681 529 300 Antisense
CAGCTGCCATGAAACTACTCAAACG 267 201 315 Antisense
TATCCTTTTCGGTAACTGTTTCACG 315 657 347 Antisense
TTTCACGTCCAGCTCAGCAAGACAT 700 671 365 Antisense
TGATTTGTGTCCCCCAAAGATTTCC 396 563 405 Antisense
GACCTATTTTGGTCCGTCGCAACAC 571 383 434 Antisense
TATGGATTTTGACTCGTTCACCGCA 492 653 489 Antisense
GGGCTTTGAAAGCTGCTTCCAACGA 437 481 690 Antisense
Sequence Source Affymetrix Proprietary Database