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[177511_at]

Description F18H3.4 /REP_DB=WormBase Gene ID /WP=CE23671 /TR=Q19580 /GB=CAA90445.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 60      6grp_total > 15      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 476.6
(3)
P 		307.6
(-3)
P 		315.4
(-2.7)
P 		350.1
(-1.5)
P 		169
B 508.1
(3)
P 		315.4
(-1.6)
P 		306
(-1.8)
P 		254.9
(-3)
P 		253
C 473.4
(3)
P 		304.5
(-2.3)
P 		367.9
(-0.3)
P 		280.9
(-3)
P 		193
avr 486
(3) 		309.2
(-2.6) 		329.8
(-1.9) 		295.3
(-3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 583.8
(3)
P 		549.9
(2.4)
P 		254.5
(-3)
P 		365.1
(-1)
P 		334.6
(-1.5)
P 		312.6
(-1.9)
P 		329
B 466.1
(3)
P 		430.1
(1.9)
P 		284.6
(-2.6)
P 		341.7
(-0.8)
P 		336.3
(-1)
P 		271.1
(-3)
P 		195
C 430.6
(2.8)
P 		438.6
(3)
P 		392.1
(1.6)
P 		327.6
(-0.3)
P 		319.9
(-0.5)
P 		234.8
(-3)
P 		204
avr 493.5
(3) 		472.9
(2.4) 		310.4
(-2) 		344.8
(-1) 		330.3
(-1.4) 		272.8
(-3) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 173.5
(3)
P 		66.8
(-2.2)
P 		82.5
(-1.5)
P 		51.2
(-3)
P 		122
B 162
(3)
P 		77.9
(-1.7)
P 		70.9
(-2.1)
P 		54.3
(-3)
P 		108
C 156.7
(3)
P 		87.5
(-0.8)
P 		128.2
(1.4)
P 		47.4
(-3)
P 		109
avr 164.1
(3) 		77.4
(-1.6) 		93.9
(-0.7) 		51
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 107.6
(-0.8)
P 		195.6
(3)
P 		55.4
(-3)
P 		92.6
(-1.4)
P 		101
(-1)
P 		76.1
(-2.1)
P 		140
B 162.2
(3)
P 		143.1
(1.8)
P 		69.1
(-3)
P 		90.5
(-1.6)
P 		136.6
(1.4)
P 		101.1
(-0.9)
P 		93
C 159.6
(3)
P 		133.8
(1.3)
P 		99.8
(-0.8)
P 		65.9
(-3)
P 		103.5
(-0.6)
P 		78.6
(-2.2)
P 		94
avr 143.1
(2) 		157.5
(3) 		74.8
(-3) 		83
(-2.4) 		113.7
(-0.2) 		85.3
(-2.2) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17885
Sequence Type Exemplar sequence
Representative Public ID F18H3.4 NCBI
Target Description F18H3.4 /REP_DB=WormBase Gene ID /WP=CE23671 /TR=Q19580 /GB=CAA90445.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077860(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077860 NCBI Caenorhabditis elegans F18H3.4 (F18H3.4) mRNA, complete cds. 11/11 None
SNAP00000001959 ENSEMBL cdna:SNAP chromosome:CEL140:X:13529021:13531441:1 11/11 None
GENEFINDER00000001963 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13529021:13531441:1 11/11 None
F18H3.4 ENSEMBL cdna:known chromosome:CEL140:X:13529005:13531951:1 gene:F18H3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13529020-13531441(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18H3.4
Entrez Gene 181474 Entrez gene
SwissProt Q19580 EMBL-EBI
WormBase CE23671 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90445 Hypothetical protein F18H3.4 [Caenorhabditis elegans] ref|NP_510261.1| F18H3.4 [Caenorhabditis elegans] 0.0
blast CAE63131 Hypothetical protein CBG07429 [Caenorhabditis briggsae] 1.0E-177
blast CAE63131 Hypothetical protein CBG07429 [Caenorhabditis briggsae] 1.0E-174
Sequence
Target Sequence 
>C. ELEGANS:177511_AT
tagagcgtcttccaacaactttacagaaagatgaaatagtcaaaccagcaacaactcaac
cgccagcactcatcgatgatgacgatgattccgccgatgagctcccaccacaactaatca
agcttaatcaaaaagtggttccagctccaattgttaagaggaacttcaaaaaaccaacgc
agccactttctcataacattgacatctacaatctttttggatcggtcaatgtggacgttc
cgaaggtctatgccgacgtcggggcagcccttaaagcagtgaaagagaaactcgacttct
acaaccagcaaaccaccaacgaactggactggggagaggagctaggcgggatggaattcc
tatcagtctcacgcactgcaagcgacatggactcacacatggatgactccatttctgatg
ttgggagcatgtccagcttctaccgatcttctagcagaacgagctgtccatcacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGAGCGTCTTCCAACAACTTTACA 477 651 839 Antisense
GTCAAACCAGCAACAACTCAACCGC 570 463 877 Antisense
CTCCCACCACAACTAATCAAGCTTA 8 235 940 Antisense
CGCAGCCACTTTCTCATAACATTGA 305 255 1016 Antisense
GTGGACGTTCCGAAGGTCTATGCCG 398 489 1069 Antisense
TCGGGGCAGCCCTTAAAGCAGTGAA 685 605 1097 Antisense
GGATGGAATTCCTATCAGTCTCACG 463 515 1187 Antisense
AGTCTCACGCACTGCAAGCGACATG 63 61 1203 Antisense
TGTTGGGAGCATGTCCAGCTTCTAC 543 563 1257 Antisense
AGCTTCTACCGATCTTCTAGCAGAA 80 79 1273 Antisense
TAGCAGAACGAGCTGTCCATCACCA 396 649 1290 Antisense
Sequence Source Affymetrix Proprietary Database