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[177510_at]

Description F57E7.3 /REP_DB=WormBase Gene ID /WP=CE18765 /TR=Q9XXT2 /GB=CAA16167.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 20      6grp_cgc > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 1.9
(-3)
A 		7.9
(3)
A 		2.6
(-2.3)
A 		7.4
(2.5)
A 		6
B 39.4
(1.1)
A 		43.2
(1.6)
A 		4.3
(-3)
A 		55.3
(3)
A 		51
C 2.6
(-3)
A 		9.3
(-1.7)
A 		9.8
(-1.6)
A 		34.2
(3)
A 		32
avr 14.6
(-1) 		20.1
(0.3) 		5.6
(-3) 		32.3
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 45.1
(3)
A 		2.1
(-3)
A 		20.8
(-0.4)
A 		4.2
(-2.7)
A 		8.3
(-2.1)
A 		8.7
(-2.1)
A 		43
B 4.3
(-2)
A 		2.5
(-3)
A 		5.2
(-1.6)
A 		2.8
(-2.8)
A 		4.8
(-1.8)
A 		13.8
(3)
A 		11
C 6.8
(-2.4)
A 		5.9
(-2.7)
A 		21.4
(1.1)
A 		8.3
(-2.1)
A 		4.5
(-3)
A 		29.4
(3)
A 		25
avr 18.7
(3) 		3.5
(-3) 		15.8
(1.9) 		5.1
(-2.4) 		5.9
(-2.1) 		17.3
(2.4) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.7
(-3)
A 		1.7
(3)
A 		0.7
(-3)
A 		1.1
(-0.6)
A 		1
B 12.6
(3)
A 		10.7
(2)
A 		1
(-3)
A 		11.8
(2.6)
A 		12
C 0.9
(-3)
A 		2.7
(-0.8)
A 		3.4
(0.1)
A 		5.8
(3)
A 		5
avr 4.7
(1) 		5
(1.4) 		1.7
(-3) 		6.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 8.3
(3)
A 		0.7
(-3)
A 		4.5
(-0)
A 		1.1
(-2.7)
A 		2.5
(-1.6)
A 		2.1
(-1.9)
A 		8
B 1.5
(-1.9)
A 		0.8
(-2.9)
A 		1.3
(-2.2)
A 		0.7
(-3)
A 		1.9
(-1.4)
A 		5.2
(3)
A 		5
C 2.5
(-2.2)
A 		1.8
(-2.7)
A 		5.4
(-0.2)
A 		1.7
(-2.8)
A 		1.4
(-3)
A 		9.9
(3)
A 		9
avr 4.1
(0.9) 		1.1
(-3) 		3.7
(0.4) 		1.2
(-2.9) 		1.9
(-2) 		5.7
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177510_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14487
Sequence Type Exemplar sequence
Representative Public ID F57E7.3 NCBI
Target Description F57E7.3 /REP_DB=WormBase Gene ID /WP=CE18765 /TR=Q9XXT2 /GB=CAA16167.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074770(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074770 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-139) (srh-139) mRNA, complete cds. 11/11 None
SNAP00000005880 ENSEMBL cdna:SNAP chromosome:CEL140:V:16486725:16487964:1 11/11 None
F57E7.3 ENSEMBL cdna:known chromosome:CEL140:V:16486563:16487964:1 gene:F57E7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16486562-16487964(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-139
Ensembl F57E7.3
Entrez Gene 186452 Entrez gene
SwissProt Q9XXT2 EMBL-EBI
WormBase CE18765 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16167 Hypothetical protein F57E7.3 [Caenorhabditis elegans] ref|NP_507171.1| Serpentine Receptor, class H family member (srh-139) [Caenorhabditis elegans] 1.0E-151
blast CAA16167 Hypothetical protein F57E7.3 [Caenorhabditis elegans] ref|NP_507171.1| Serpentine Receptor, class H family member (srh-139) [Caenorhabditis elegans] 1.0E-117
blast CAA15967 Hypothetical protein Y6E2A.6 [Caenorhabditis elegans] ref|NP_506913.1| Serpentine Receptor, class H family member (srh-140) [Caenorhabditis elegans] 1.0E-79
blast CAB16538 Hypothetical protein Y70C5C.4 [Caenorhabditis elegans] ref|NP_507229.1| Serpentine Receptor, class H family member (srh-137) [Caenorhabditis elegans] 9.0E-68
blast CAA15967 Hypothetical protein Y6E2A.6 [Caenorhabditis elegans] ref|NP_506913.1| Serpentine Receptor, class H family member (srh-140) [Caenorhabditis elegans] 6.0E-55
blast CAB16538 Hypothetical protein Y70C5C.4 [Caenorhabditis elegans] ref|NP_507229.1| Serpentine Receptor, class H family member (srh-137) [Caenorhabditis elegans] 3.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507171.1 6 15-37,58-80,95-117,138-160,194-216,239-261
F57E7.3 6 15-37,58-80,95-117,138-160,194-216,239-261
SNAP00000005880 5 7-26,41-63,84-106,140-162,185-207
Sequence
Target Sequence 
>C. ELEGANS:177510_AT
actactccgtcgagattccgatactaagcgtcgaaaaataaaacgaataattcacattgg
atttaactatattcttggattaaccggaacacttgccattctgtttagaactacagattc
cagagaatcccatctaaaggttcttgaaaagttcccgtgtttaccaaaagatattatcga
caaaccgggattttatgtgctcgcggaaagttcattgggtctggtggttccgttcatgtt
ttatatggtgtttacagcctcacagattatattcttcttctataaaactcttacattcct
gttcaaaactagaacaatatcccaaaagactactgaaatgcagaagaaattatttataaa
tctttgcatccaaataacagttccacttgtagtcgtattcgttccttgtgtttatttgaa
tatctctggattattcaatcatttggatatgcttatagataatattggacaacttatcat
ttcaacacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACTCCGTCGAGATTCCGATACT 368 101 378 Antisense
TTAACCGGAACACTTGCCATTCTGT 239 683 457 Antisense
CAAACCGGGATTTTATGTGCTCGCG 76 191 558 Antisense
AAGTTCATTGGGTCTGGTGGTTCCG 484 153 585 Antisense
TGGTGGTTCCGTTCATGTTTTATAT 217 553 599 Antisense
TATGGTGTTTACAGCCTCACAGATT 356 655 621 Antisense
TAAAACTCTTACATTCCTGTTCAAA 421 639 660 Antisense
TTTGCATCCAAATAACAGTTCCACT 702 667 740 Antisense
CAGTTCCACTTGTAGTCGTATTCGT 283 207 755 Antisense
TCGTATTCGTTCCTTGTGTTTATTT 172 603 770 Antisense
TGGACAACTTATCATTTCAACACAT 322 547 843 Antisense
Sequence Source Affymetrix Proprietary Database