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[177509_at]

Description K05D4.6 /REP_DB=WormBase Gene ID /WP=CE16231 /TR=O45660 /GB=CAB07251.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 43      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.1
(-0.7)
A 		9
(3)
A 		4.3
(-3)
A 		5.6
(-1.3)
A 		5
B 3.1
(-2.2)
A 		9.5
(3)
A 		4
(-1.5)
A 		2.1
(-3)
A 		7
C 2
(-3)
A 		3.3
(-0.6)
A 		2.5
(-2.1)
A 		5.3
(3)
A 		3
avr 3.7
(-2.8) 		7.3
(3) 		3.6
(-3) 		4.3
(-1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6.7
(3)
A 		3.1
(-1.6)
A 		2
(-3)
A 		2.5
(-2.4)
A 		3.1
(-1.6)
A 		4.4
(0.1)
A 		5
B 2.3
(-2.9)
A 		10.2
(3)
A 		2.4
(-2.9)
A 		2.4
(-2.9)
A 		2.2
(-3)
A 		2.6
(-2.7)
A 		8
C 5.3
(-0)
A 		4.7
(-0.5)
A 		8.9
(3)
A 		2.5
(-2.3)
A 		4.4
(-0.8)
A 		1.7
(-3)
A 		7
avr 4.8
(0.9) 		6
(3) 		4.4
(0.3) 		2.5
(-3) 		3.2
(-1.8) 		2.9
(-2.3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.2
(3)
A 		2
(2.1)
A 		1.1
(-1.7)
A 		0.8
(-3)
A 		1
B 1
(-1.1)
A 		2.3
(3)
A 		0.9
(-1.4)
A 		0.4
(-3)
A 		2
C 0.7
(-3)
A 		1
(3)
A 		0.9
(1)
A 		0.9
(1)
A 		0
avr 1.3
(0.3) 		1.8
(3) 		1
(-1.4) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.2
(3)
A 		1.1
(2.3)
A 		0.4
(-3)
A 		0.6
(-1.5)
A 		0.9
(0.8)
A 		1.1
(2.3)
A 		1
B 0.8
(-2.6)
A 		3.4
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.9
(-2.4)
A 		1
(-2.1)
A 		3
C 2
(2)
A 		1.4
(0)
A 		2.3
(3)
A 		0.5
(-3)
A 		1.4
(0)
A 		0.6
(-2.7)
A 		2
avr 1.3
(0) 		2
(3) 		1.1
(-0.9) 		0.6
(-3) 		1.1
(-0.9) 		0.9
(-1.7) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13272
Sequence Type Exemplar sequence
Representative Public ID K05D4.6 NCBI
Target Description K05D4.6 /REP_DB=WormBase Gene ID /WP=CE16231 /TR=O45660 /GB=CAB07251.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074678 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-277) (srh-277) mRNA, complete cds. 11/11 None
SNAP00000023576 ENSEMBL cdna:SNAP chromosome:CEL140:V:16188768:16189503:1 11/11 None
GENEFINDER00000023582 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16187986:16191232:1 11/11 None
K05D4.6 ENSEMBL cdna:known chromosome:CEL140:V:16187986:16189503:1 gene:K05D4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16187985-16189503(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-277
Ensembl K05D4.6
Entrez Gene 187026 Entrez gene
SwissProt O45660 EMBL-EBI
WormBase CE16231 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07251 Hypothetical protein K05D4.6 [Caenorhabditis elegans] ref|NP_507079.1| Serpentine Receptor, class H family member (srh-277) [Caenorhabditis elegans] 1.0E-169
blast CAB07251 Hypothetical protein K05D4.6 [Caenorhabditis elegans] ref|NP_507079.1| Serpentine Receptor, class H family member (srh-277) [Caenorhabditis elegans] 1.0E-168
blast CAB05808 Hypothetical protein T09F5.8 [Caenorhabditis elegans] ref|NP_506743.1| Serpentine Receptor, class H family member (srh-278) [Caenorhabditis elegans] 1.0E-119
blast CAB07251 Hypothetical protein K05D4.6 [Caenorhabditis elegans] ref|NP_507079.1| Serpentine Receptor, class H family member (srh-277) [Caenorhabditis elegans] 1.0E-111
blast CAE69651 Hypothetical protein CBG15897 [Caenorhabditis briggsae] 2.0E-76
blast CAE69651 Hypothetical protein CBG15897 [Caenorhabditis briggsae] 3.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.2E-68
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507079.1 7 15-37,50-72,92-114,133-155,198-220,240-262,277-299
K05D4.6 7 15-37,50-72,92-114,133-155,198-220,240-262,277-299
SNAP00000023576 4 13-35,78-100,120-142,157-179
GENEFINDER00000023582 9 15-37,50-72,92-114,133-155,198-220,240-262,277-299,394-413,450-472
Sequence
Target Sequence 
>C. ELEGANS:177509_AT
acctcatcaattattctctggcgcttttgtactttgtgcctaccgtaatccaaattccag
atcaaaccgttgcgagattagcgatattcgagttgtacccccaggtccgtcactttgaca
ccccggagcatgagatttttgtggtggcctatgatatggaagtccgagagtacatcgggt
atcggcagctaataagcttaggtgttataattatacaaggtcttgcatttttgataattc
tgcattgcaatatttcaatgtccaccagaaatatgacaatatcaaaaaccactttaaaga
tgcaaaggatgtttttgaatgcagtatacatgcagatcgcgatccctgcaatcatcatga
tagttcctcaaattatactgaacgttctcggctacctgtacatgaacagcccagaaatga
acagtcttgcatacatgttcatgtcgattcatggagcatctgcatcggttatcatgctct
acttccatgctccataccaggaattctgcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTCATCAATTATTCTCTGGCGCT 10 89 419 Antisense
TGGCGCTTTTGTACTTTGTGCCTAC 443 545 437 Antisense
TAGCGATATTCGAGTTGTACCCCCA 36 651 497 Antisense
ACTTTGACACCCCGGAGCATGAGAT 313 101 530 Antisense
GAGTACATCGGGTATCGGCAGCTAA 99 399 586 Antisense
AGTATACATGCAGATCGCGATCCCT 193 63 741 Antisense
GCGATCCCTGCAATCATCATGATAG 296 289 757 Antisense
TTATACTGAACGTTCTCGGCTACCT 8 679 791 Antisense
ATGGAGCATCTGCATCGGTTATCAT 558 51 869 Antisense
CGGTTATCATGCTCTACTTCCATGC 519 243 884 Antisense
TGCTCCATACCAGGAATTCTGCGCA 615 579 906 Antisense
Sequence Source Affymetrix Proprietary Database