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[177508_at]

Description F48F7.6 /REP_DB=WormBase Gene ID /WP=CE05893 /TR=Q20573 /GB=CAA93491.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 76      6grp_total > 40      4grp_total > 47      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 523
1 2 3 4 range
A 1144
(3)
P 		638
(-3)
P 		725.9
(-2)
P 		667.3
(-2.7)
P 		506
B 1123.4
(3)
P 		858.9
(-0.4)
P 		662.7
(-3)
P 		933.1
(0.5)
P 		461
C 1160.5
(3)
P 		800.1
(-2)
P 		728.5
(-3)
P 		767.4
(-2.5)
P 		432
avr 1142.6
(3) 		765.7
(-2.2) 		705.7
(-3) 		789.3
(-1.9) 		437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 465
1 2 3 4 5 6 range
A 967.4
(-0.6)
P 		985.5
(-0.1)
P 		1089.7
(2.6)
P 		1106.2
(3)
P 		872.3
(-3)
P 		940.6
(-1.2)
P 		234
B 1205.4
(3)
P 		1060
(0.7)
P 		1125.9
(1.8)
P 		1164.5
(2.4)
P 		821.5
(-3)
P 		916
(-1.5)
P 		384
C 1069.8
(1.3)
P 		1197.6
(3)
P 		1048.4
(1)
P 		1057.3
(1.2)
P 		740.1
(-3)
P 		1060.9
(1.2)
P 		458
avr 1080.9
(2.4) 		1081
(2.4) 		1088
(2.6) 		1109.3
(3) 		811.3
(-3) 		972.5
(0.2) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 416.5
(3)
P 		138.5
(-2.2)
P 		189.8
(-1.3)
P 		97.7
(-3)
P 		319
B 358.3
(3)
P 		212.1
(-1.3)
P 		153.6
(-3)
P 		198.8
(-1.7)
P 		205
C 384.2
(3)
P 		230
(-0.6)
P 		253.9
(-0.1)
P 		129.4
(-3)
P 		255
avr 386.3
(3) 		193.5
(-1.7) 		199.1
(-1.6) 		142
(-3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 178.3
(-3)
P 		350.5
(3)
P 		237.3
(-0.9)
P 		280.6
(0.6)
P 		263.2
(-0)
P 		229
(-1.2)
P 		172
B 419.4
(3)
P 		352.8
(0.3)
P 		273.4
(-3)
P 		308.4
(-1.6)
P 		333.8
(-0.5)
P 		341.6
(-0.2)
P 		146
C 396.5
(3)
P 		365.4
(2)
P 		266.8
(-1.2)
P 		212.6
(-3)
P 		239.5
(-2.1)
P 		355.2
(1.7)
P 		184
avr 331.4
(1.5) 		356.2
(3) 		259.2
(-3) 		267.2
(-2.5) 		278.8
(-1.8) 		308.6
(0.1) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177508_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17477
Sequence Type Exemplar sequence
Representative Public ID F48F7.6 NCBI
Target Description F48F7.6 /REP_DB=WormBase Gene ID /WP=CE05893 /TR=Q20573 /GB=CAA93491.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077926 NCBI Caenorhabditis elegans F48F7.6 (F48F7.6) mRNA, complete cds. 11/11 None
SNAP00000000617 ENSEMBL cdna:SNAP chromosome:CEL140:X:13977753:13978700:1 11/11 None
GENEFINDER00000000622 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13977753:13978700:1 11/11 None
F48F7.6.2 ENSEMBL cdna:known chromosome:CEL140:X:13977748:13978884:1 gene:F48F7.6 11/11 None
F48F7.6.1 ENSEMBL cdna:known chromosome:CEL140:X:13977749:13978884:1 gene:F48F7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13977752-13978700(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48F7.6
Entrez Gene 181507 Entrez gene
SwissProt Q20573 EMBL-EBI
WormBase CE05893 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93491 Hypothetical protein F48F7.6 [Caenorhabditis elegans] ref|NP_510327.1| F48F7.6 [Caenorhabditis elegans] 1.0E-123
blast CAE63057 Hypothetical protein CBG07334 [Caenorhabditis briggsae] 2.0E-51
Sequence
Target Sequence 
>C. ELEGANS:177508_AT
gagagcgcctttttgatgatctgtcttcaacgcaacacgatcgagctcatggtcactgcc
ctgctggccaataagaaaattatcgattcaaagggtaactgtgcgttctgccgcaacaaa
aaacaacacgaggaggaaaagtggtgcgctggaaggaccaagcttcagctctttttacat
cgaattgacaaggatgaactaaaagttgaggaatatctcgagaagtatctagagattaaa
accagaaatcgcatggaacaattggacattgttcaagccagaattgtaagagagatgaag
gctgtagcaattgctcagggaaaatcagaagaggaggttgagcacattctggcaaagcaa
ggacgtaaagctcgtcgaatgcaaagatctgaatacaaacacgcagaggaagacaataaa
ggtgttcgccaaagacttgccgccaaacttgtggccaagaaatcggaaattattgagcgt
ttctgccttgctcaacgtactgtctttgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGCGCCTTTTTGATGATCTGTC 125 395 157 Antisense
GATGATCTGTCTTCAACGCAACACG 335 411 171 Antisense
ACACGATCGAGCTCATGGTCACTGC 444 109 191 Antisense
TCACTGCCCTGCTGGCCAATAAGAA 331 627 209 Antisense
CAAAGGGTAACTGTGCGTTCTGCCG 90 193 245 Antisense
CAAGCTTCAGCTCTTTTTACATCGA 541 185 315 Antisense
GAGGAGGTTGAGCACATTCTGGCAA 27 405 487 Antisense
AAAGGTGTTCGCCAAAGACTTGCCG 314 121 574 Antisense
CTTGCCGCCAAACTTGTGGCCAAGA 32 219 592 Antisense
AAATTATTGAGCGTTTCTGCCTTGC 650 115 623 Antisense
CTTGCTCAACGTACTGTCTTTGTTA 645 217 643 Antisense
Sequence Source Affymetrix Proprietary Database