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[177507_at]

Description T18D3.6 /REP_DB=WormBase Gene ID /WP=CE03667 /TR=Q22543 /GB=CAA92195.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 72      6grp_total > 62      4grp_total > 11      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 78.6
(-0.8)
M 		71.6
(-1)
A 		24.7
(-3)
A 		168.5
(3)
P 		144
B 68
(-2)
A 		67.8
(-2)
A 		48.1
(-3)
A 		169.9
(3)
P 		122
C 45
(-3)
M 		59.1
(-2.4)
A 		56.6
(-2.5)
A 		190.2
(3)
P 		145
avr 63.9
(-2.1) 		66.2
(-2) 		43.1
(-3) 		176.2
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 31.4
(-3)
A 		67.1
(-0.5)
A 		116.1
(3)
P 		49.3
(-1.7)
A 		50.1
(-1.7)
P 		51.6
(-1.6)
P 		85
B 41.5
(-3)
A 		74.9
(-0.1)
P 		62.8
(-1.2)
P 		110.8
(3)
P 		46.1
(-2.6)
P 		54.6
(-1.9)
P 		69
C 21
(-3)
P 		92.9
(1.1)
P 		126.5
(3)
A 		104.1
(1.7)
A 		79.4
(0.3)
P 		36.7
(-2.1)
A 		106
avr 31.3
(-3) 		78.3
(1) 		101.8
(3) 		88.1
(1.8) 		58.5
(-0.7) 		47.6
(-1.6) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 28.6
(3)
M 		15.5
(-0.6)
A 		6.5
(-3)
A 		24.7
(1.9)
P 		22
B 21.7
(-0.5)
A 		16.7
(-1.7)
A 		11.2
(-3)
A 		36.2
(3)
P 		25
C 14.9
(-3)
M 		17
(-2.3)
A 		19.7
(-1.3)
A 		32.1
(3)
P 		17
avr 21.7
(-0) 		16.4
(-1.7) 		12.5
(-3) 		31
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 5.8
(-3)
A 		23.9
(2.6)
A 		25.3
(3)
P 		12.5
(-0.9)
A 		15.1
(-0.1)
P 		12.6
(-0.9)
P 		20
B 14.4
(-3)
A 		24.9
(1.2)
P 		15.3
(-2.6)
P 		29.3
(3)
P 		18.7
(-1.3)
P 		20.4
(-0.6)
P 		15
C 7.8
(-3)
P 		28.3
(2)
P 		32.2
(3)
A 		20.9
(0.2)
A 		25.7
(1.4)
P 		12.3
(-1.9)
A 		24
avr 9.3
(-3) 		25.7
(3) 		24.3
(2.5) 		20.9
(1.2) 		19.8
(0.8) 		15.1
(-0.9) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16240
Sequence Type Exemplar sequence
Representative Public ID T18D3.6 NCBI
Target Description T18D3.6 /REP_DB=WormBase Gene ID /WP=CE03667 /TR=Q22543 /GB=CAA92195.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077686(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077686 NCBI Caenorhabditis elegans T18D3.6 (T18D3.6) mRNA, complete cds. 11/11 None
SNAP00000005384 ENSEMBL cdna:SNAP chromosome:CEL140:X:12449838:12450738:1 11/11 None
GENEFINDER00000005392 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12449838:12450848:1 11/11 None
T18D3.6 ENSEMBL cdna:known chromosome:CEL140:X:12449838:12450738:1 gene:T18D3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12449837-12450738(+) 94.49 100.0
Public Domain and Genome References
Gene Title
Ensembl T18D3.6
Entrez Gene 188576 Entrez gene
SwissProt Q22543 EMBL-EBI
WormBase CE03667 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92195 Hypothetical protein T18D3.6 [Caenorhabditis elegans] ref|NP_510087.1| T18D3.6 [Caenorhabditis elegans] 1.0E-100
blast CAA92195 Hypothetical protein T18D3.6 [Caenorhabditis elegans] ref|NP_510087.1| T18D3.6 [Caenorhabditis elegans] 8.0E-99
blast CAE57248 Hypothetical protein CBG00126 [Caenorhabditis briggsae] 4.0E-34
blast CAE57248 Hypothetical protein CBG00126 [Caenorhabditis briggsae] 1.0E-29
Sequence
Target Sequence 
>C. ELEGANS:177507_AT
ggcggcagtttttgctgcaacaccttcgacctgagcattttcagcctggtggattctttg
atccgcagccagagggaaactatcatcctttgtctccacaacatagtgacgaagagcttg
atgacgcggaagaggagattgagagacagcgacgaatccgccaaaactggagaaactaca
tgaaccagagagttgatcccattccacaagagatcgttgaccgcttgctccgggaatacg
acaattgggcaagagccgcgttaaacaataacaatggaaattttcgaaactacaatgcga
tgctctccccatcaccatctccatcaccaaatgcatcaccagcaccgtcagacgacgaag
atccgatggagcacgtgaattctgatgatgaagatgtcgagatgcttaatgctcaaatga
tggaaatgcgtcccaatcagccgagaccaagaaagcgtcataattctcaaggaccattac
cgatcaaaaggaaaagagtcactttcaaggaggactcttcagatgaggccatcaactcat
tcgatgaggacagctccgattgcaatgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGCAGTTTTTGCTGCAACACCT 181 541 227 Antisense
CGACCTGAGCATTTTCAGCCTGGTG 81 251 253 Antisense
TGGTGGATTCTTTGATCCGCAGCCA 428 553 273 Antisense
GGAAACTATCATCCTTTGTCTCCAC 4 529 301 Antisense
GAGAGACAGCGACGAATCCGCCAAA 665 393 367 Antisense
GAACCAGAGAGTTGATCCCATTCCA 635 345 408 Antisense
ACAAGAGATCGTTGACCGCTTGCTC 520 111 432 Antisense
CGTCCCAATCAGCCGAGACCAAGAA 424 245 655 Antisense
AATTCTCAAGGACCATTACCGATCA 233 177 688 Antisense
GGAGGACTCTTCAGATGAGGCCATC 271 515 735 Antisense
GAGGACAGCTCCGATTGCAATGACA 179 405 772 Antisense
Sequence Source Affymetrix Proprietary Database