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[177506_at]

Description F17B5.5 /REP_DB=WormBase Gene ID /WP=CE18607 /TR=Q9XTG3 /GB=CAA18377.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 47
(-3)
A 		133.4
(3)
A 		56.5
(-2.3)
A 		120
(2.1)
A 		86
B 20.9
(-2.4)
A 		72.8
(1.3)
A 		95.5
(3)
A 		13
(-3)
A 		83
C 34.7
(-3)
A 		134
(3)
A 		59.3
(-1.5)
A 		74.7
(-0.6)
A 		99
avr 34.2
(-3) 		113.4
(3) 		70.4
(-0.3) 		69.2
(-0.3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 8.6
(-3)
A 		75.2
(3)
A 		36
(-0.5)
A 		15.8
(-2.4)
A 		29.8
(-1.1)
A 		13.8
(-2.5)
A 		67
B 39.4
(0.2)
A 		42.7
(0.5)
A 		47.1
(0.9)
A 		11.7
(-2.5)
A 		68.9
(3)
A 		6.4
(-3)
A 		63
C 14.5
(-2.3)
A 		94
(3)
A 		3.4
(-3)
A 		7.1
(-2.8)
A 		11.6
(-2.5)
A 		10.2
(-2.5)
A 		91
avr 20.8
(-1.9) 		70.6
(3) 		28.8
(-1.1) 		11.5
(-2.9) 		36.8
(-0.4) 		10.1
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 17.1
(-2)
A 		28.9
(3)
A 		14.8
(-3)
A 		17.6
(-1.8)
A 		14
B 6.7
(-1.8)
A 		18
(1.7)
A 		22.1
(3)
A 		2.8
(-3)
A 		19
C 11.5
(-3)
A 		38.5
(3)
A 		20.7
(-1)
A 		12.6
(-2.8)
A 		27
avr 11.8
(-2.7) 		28.5
(3) 		19.2
(-0.2) 		11
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.6
(-3)
A 		26.7
(3)
A 		7.8
(-1.5)
A 		4
(-2.4)
A 		9
(-1.2)
A 		3.4
(-2.6)
A 		25
B 13.7
(-0.4)
A 		14.2
(-0.2)
A 		11.4
(-0.9)
A 		3.1
(-2.8)
A 		28
(3)
A 		2.4
(-3)
A 		26
C 5.4
(-2)
A 		28.7
(3)
A 		0.9
(-3)
A 		1.4
(-2.9)
A 		3.8
(-2.4)
A 		3.4
(-2.5)
A 		28
avr 6.9
(-1.8) 		23.2
(3) 		6.7
(-1.9) 		2.8
(-3) 		13.6
(0.2) 		3.1
(-2.9) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177506_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2417
Sequence Type Exemplar sequence
Representative Public ID F17B5.5 NCBI
Target Description F17B5.5 /REP_DB=WormBase Gene ID /WP=CE18607 /TR=Q9XTG3 /GB=CAA18377.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060911 NCBI Caenorhabditis elegans F17B5.5 (F17B5.5) mRNA, complete cds. 11/11 None
F17B5.5 ENSEMBL cdna:known chromosome:CEL140:I:13212616:13213522:1 gene:F17B5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002458 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13212546-13213453(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17B5.5
Entrez Gene 184613 Entrez gene
SwissProt Q9XTG3 EMBL-EBI
WormBase CE18607 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02973 Hypothetical protein F17B5.5 [Caenorhabditis elegans] emb|CAA18377.1| Hypothetical protein F17B5.5 [Caenorhabditis elegans] ref|NP_493312.1| F17B5.5 [Caenorhabditis elegans] 1.0E-113
blast CAB07590 Hypothetical protein F21H7.4 [Caenorhabditis elegans] ref|NP_507097.1| F21H7.4 [Caenorhabditis elegans] 5.0E-53
blast CAE61126 Hypothetical protein CBG04885 [Caenorhabditis briggsae] emb|CAE61097.1| Hypothetical protein CBG04852 [Caenorhabditis briggsae] 1.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493312.1 1 7-25
F17B5.5 1 7-25
Sequence
Target Sequence 
>C. ELEGANS:177506_AT
gaagaacatagacatagacccccgcatcggccgaggcctccaagaccctcaagaccaaca
actccgagaggtgaatgtgacgatggatggttgagattcgagagggatcacgaaatctgg
atcacaaatgctatgcttactcaaccgactgctgaaaccctctgccaaacaatgggtgcc
acgttgacaggatatcaaaatgataatgagcgagtgaccactgcaaatgaagcactgaaa
aaactcgtagctgccggacaatctaccattgccgcgacaaatgtaccagcatgcagatac
caaagctgtggaccttataacacatttacatggaccgatggtcacacgaatggaactgca
ggcttcagcaaatggggagttggacaacccgataatcgtaactatggaggacctacaatc
tgtcttcaacaattcatcatgacccctaactgggtcggacttcgaggagacctcgaggaa
tggagagctgctttcaccaatggagatcttgatagatatggatgcctagacgctccagga
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAACATAGACATAGACCCCCGC 284 339 145 Antisense
AAATGCTATGCTTACTCAACCGACT 598 117 270 Antisense
TTACTCAACCGACTGCTGAAACCCT 569 675 281 Antisense
ATGGGTGCCACGTTGACAGGATATC 126 51 316 Antisense
AAAACTCGTAGCTGCCGGACAATCT 524 129 384 Antisense
GCCGCGACAAATGTACCAGCATGCA 639 285 415 Antisense
GGACCGATGGTCACACGAATGGAAC 211 523 476 Antisense
GGAGGACCTACAATCTGTCTTCAAC 514 515 550 Antisense
ACAATTCATCATGACCCCTAACTGG 347 115 573 Antisense
ATGGAGAGCTGCTTTCACCAATGGA 56 53 624 Antisense
TATGGATGCCTAGACGCTCCAGGAC 22 655 661 Antisense
Sequence Source Affymetrix Proprietary Database