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[177505_at]

Description T06G6.6 /REP_DB=WormBase Gene ID /WP=CE13343 /TR=O18052 /GB=CAB04705.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1050
1 2 3 4 range
A 29.5
(-2.8)
A 		982.4
(3)
P 		825.2
(2)
P 		3.4
(-3)
A 		979
B 7.9
(-3)
A 		763.6
(1.5)
P 		1020.6
(3)
P 		9
(-3)
A 		1013
C 9
(-3)
A 		712.1
(1)
P 		1053.4
(3)
P 		40.5
(-2.8)
A 		1044
avr 15.5
(-3) 		819.4
(2.1) 		966.4
(3) 		17.6
(-3) 		951

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1127
1 2 3 4 5 6 range
A 152.3
(-3)
A 		493.9
(-1)
P 		498.2
(-1)
P 		1177.5
(3)
P 		1101.9
(2.6)
P 		184.6
(-2.8)
A 		1025
B 50.4
(-3)
A 		636.7
(0.8)
P 		614.2
(0.7)
P 		976.6
(3)
P 		782
(1.7)
P 		190.9
(-2.1)
A 		926
C 53
(-3)
A 		642.6
(0.5)
P 		643.2
(0.5)
P 		1071.9
(3)
P 		716.9
(0.9)
P 		230.4
(-2)
A 		1019
avr 85.2
(-3) 		591.1
(0.1) 		585.2
(0) 		1075.3
(3) 		866.9
(1.7) 		202
(-2.3) 		990
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 10.7
(-2.7)
A 		213.2
(2.9)
P 		215.7
(3)
P 		0.5
(-3)
A 		215
B 2.5
(-3)
A 		188.6
(1.8)
P 		236.5
(3)
P 		1.9
(-3)
A 		235
C 3
(-3)
A 		204.7
(0.3)
P 		367.1
(3)
P 		6.8
(-2.9)
A 		364
avr 5.4
(-2.9) 		202.2
(1.4) 		273.1
(3) 		3.1
(-3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 28.1
(-3)
A 		175.7
(-0.1)
P 		108.5
(-1.4)
P 		298.6
(2.3)
P 		332.5
(3)
P 		45
(-2.7)
A 		304
B 17.5
(-3)
A 		211.9
(0.9)
P 		149.1
(-0.4)
P 		258.7
(1.8)
P 		317.7
(3)
P 		71.2
(-1.9)
A 		300
C 19.6
(-3)
A 		196.1
(2)
P 		163.7
(1.1)
P 		215.6
(2.5)
P 		232
(3)
P 		77.1
(-1.4)
A 		212
avr 21.7
(-3) 		194.6
(0.8) 		140.4
(-0.4) 		257.6
(2.2) 		294.1
(3) 		64.4
(-2.1) 		272
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177505_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2185
Sequence Type Exemplar sequence
Representative Public ID T06G6.6 NCBI
Target Description T06G6.6 /REP_DB=WormBase Gene ID /WP=CE13343 /TR=O18052 /GB=CAB04705.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060824(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060824 NCBI Caenorhabditis elegans T06G6.6 (T06G6.6) mRNA, complete cds. 10/11 None
GENEFINDER00000021723 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12726503:12730157:1 10/11 None
SNAP00000021712 ENSEMBL cdna:SNAP chromosome:CEL140:I:12727091:12727876:1 9/11 None
T06G6.6 ENSEMBL cdna:known chromosome:CEL140:I:12726493:12727893:1 gene:T06G6.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12726433-12727807(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06G6.6
Entrez Gene 188198 Entrez gene
SwissProt O18052 EMBL-EBI
WormBase CE37143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04706 Hypothetical protein T06G6.7 [Caenorhabditis elegans] ref|NP_493226.1| Serpentine Receptor, class W family member (srw-88) [Caenorhabditis elegans] 0.0
blast CAB04705 Hypothetical protein T06G6.6 [Caenorhabditis elegans] ref|NP_493225.2| T06G6.6 [Caenorhabditis elegans] 1.0E-126
blast CAB04705 Hypothetical protein T06G6.6 [Caenorhabditis elegans] ref|NP_493225.2| T06G6.6 [Caenorhabditis elegans] 1.0E-97
blast CAE67988 Hypothetical protein CBG13598 [Caenorhabditis briggsae] 4.0E-80
blast CAE57086 Hypothetical protein CBG24986 [Caenorhabditis briggsae] 1.0E-79
blast CAB04705 Hypothetical protein T06G6.6 [Caenorhabditis elegans] ref|NP_493225.2| T06G6.6 [Caenorhabditis elegans] 3.0E-75
blast CAE67988 Hypothetical protein CBG13598 [Caenorhabditis briggsae] 1.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021723 8 5-27,228-250,257-279,318-340,353-375,425-447,468-490,516-538
Sequence
Target Sequence 
>C. ELEGANS:177505_AT
gctcctcatttttaaatcgctcagctgaaacccgagaatatgcctgccaacgtcaatcct
cgagatcttcaaagtcagaatgtatgttaagatttggagaggtgtctgctacaattaatg
ataatgggtgctttatgcactttgactcaaagaagctagaatcaattgagctgtgtccac
ttcaatgccaaaggttcaatgaggccactattctgcagacctctgactctttaatctgct
ctccgggagttgctgtcggagttgaaagacgacaaagtgattggtttatgtggagaagtg
gggcttgtaaatccagcgatgtcatcttccagattgagtgctccacaaaacaagctaaag
aacaagatcagatggtggaggttcccgaggaggttcaggtggtcgaggaggagattccag
tgatgaagttggagacggacaatgggattcaggaagaaatgacctcatcaattgaagaca
ttacgtcaggaaccgaaaaaaccaccgtggagcagtccacgactcaaaaaccagaagttt
ccgagcaagaagatgatcttccagagaaagtcgatacgctcctagggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCTCATTTTTAAATCGCTCAGC 34 299 104 Antisense
GAGAATATGCCTGCCAACGTCAATC 54 391 137 Antisense
CAACGTCAATCCTCGAGATCTTCAA 321 187 151 Antisense
GAATCAATTGAGCTGTGTCCACTTC 515 327 262 Antisense
GTGTCCACTTCAATGCCAAAGGTTC 444 483 276 Antisense
GGTTCAATGAGGCCACTATTCTGCA 710 505 296 Antisense
TATTCTGCAGACCTCTGACTCTTTA 52 665 312 Antisense
AATCTGCTCTCCGGGAGTTGCTGTC 462 169 336 Antisense
TGTAAATCCAGCGATGTCATCTTCC 543 559 409 Antisense
GAGGTTCCCGAGGAGGTTCAGGTGG 176 403 481 Antisense
AGAAAGTCGATACGCTCCTAGGGTT 292 73 668 Antisense
Sequence Source Affymetrix Proprietary Database