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[177504_at]

Description W05B2.7 /REP_DB=WormBase Gene ID /WP=CE21259 /TR=Q9XVG2 /GB=CAB03476.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 41      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 35.7
(-3)
P 		52.7
(-1.4)
P 		87.2
(2)
A 		97.8
(3)
M 		62
B 61
(1)
P 		70.1
(3)
A 		46.5
(-2.2)
A 		42.8
(-3)
A 		27
C 59.9
(-0.5)
A 		82.5
(3)
A 		76.1
(2)
A 		43.9
(-3)
A 		39
avr 52.2
(-3) 		68.4
(2.5) 		69.9
(3) 		61.5
(0.2) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 62.4
(3)
A 		47.5
(1.3)
A 		16.2
(-2.2)
A 		49.5
(1.5)
A 		9.2
(-3)
A 		40
(0.5)
A 		53
B 50.7
(2.6)
A 		44.9
(1.9)
A 		54
(3)
A 		5.5
(-3)
A 		34.5
(0.6)
A 		45
(1.9)
A 		49
C 61.7
(3)
P 		60
(2.8)
A 		51.1
(1.8)
A 		6.4
(-3)
A 		19.3
(-1.6)
A 		14.1
(-2.2)
A 		55
avr 58.3
(3) 		50.8
(1.8) 		40.4
(0.2) 		20.5
(-3) 		21
(-2.9) 		33
(-1) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13
(-2.2)
P 		11.4
(-3)
P 		22.8
(3)
A 		14.3
(-1.5)
M 		11
B 19.5
(3)
P 		17.3
(1.7)
A 		10.8
(-2)
A 		9.1
(-3)
A 		10
C 19.8
(0.9)
A 		23.7
(2.1)
A 		26.5
(3)
A 		7.4
(-3)
A 		19
avr 17.4
(1.4) 		17.5
(1.5) 		20
(3) 		10.3
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 11.5
(0.7)
A 		16.9
(3)
A 		3.5
(-2.7)
A 		12.6
(1.2)
A 		2.8
(-3)
A 		9.7
(-0.1)
A 		14
B 17.7
(3)
A 		14.9
(2)
A 		13.1
(1.3)
A 		1.5
(-3)
A 		14
(1.6)
A 		16.8
(2.7)
A 		16
C 22.9
(3)
P 		18.3
(1.7)
A 		13
(0.3)
A 		1.3
(-3)
A 		6.3
(-1.6)
A 		4.7
(-2.1)
A 		22
avr 17.4
(3) 		16.7
(2.7) 		9.9
(-0.7) 		5.1
(-3) 		7.7
(-1.7) 		10.4
(-0.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177504_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6819
Sequence Type Exemplar sequence
Representative Public ID W05B2.7 NCBI
Target Description W05B2.7 /REP_DB=WormBase Gene ID /WP=CE21259 /TR=Q9XVG2 /GB=CAB03476.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067010 NCBI Caenorhabditis elegans W05B2.7 (W05B2.7) mRNA, complete cds. 11/11 None
SNAP00000036393 ENSEMBL cdna:SNAP chromosome:CEL140:III:10988010:10989939:1 11/11 None
GENEFINDER00000036394 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10988010:10989939:1 11/11 None
W05B2.7 ENSEMBL cdna:known chromosome:CEL140:III:10988010:10989948:1 gene:W05B2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10988005-10989944(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05B2.7
Entrez Gene 176529 Entrez gene
SwissProt Q9XVG2 EMBL-EBI
WormBase CE21259 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03476 Hypothetical protein W05B2.7 [Caenorhabditis elegans] ref|NP_499411.1| W05B2.7 [Caenorhabditis elegans] 1.0E-166
blast CAB03476 Hypothetical protein W05B2.7 [Caenorhabditis elegans] ref|NP_499411.1| W05B2.7 [Caenorhabditis elegans] 1.0E-165
blast CAE71357 Hypothetical protein CBG18260 [Caenorhabditis briggsae] 1.0E-132
blast CAB03476 Hypothetical protein W05B2.7 [Caenorhabditis elegans] ref|NP_499411.1| W05B2.7 [Caenorhabditis elegans] 1.0E-104
blast CAE71460 Hypothetical protein CBG18378 [Caenorhabditis briggsae] 1.0E-83
Sequence
Target Sequence 
>C. ELEGANS:177504_AT
atgcttcgcactattttcgagccgaacttcaagccaaaacggcacgcggcagaagcctgg
acggaatccttaaaatttgtgagcgacaaggcgtttttcatcaagctggccacttgtgac
gcggatattttgacggtggaccagatgaaggtactgaagaaatacgtggatcgagccgag
ttcaacgcaaacaagatcgaacacgagtcggtggtgtgcgcgtgtctttgccgatggatc
ggagcgtttttggagttggcttgcacacttcgagtaatggaagaacaagtcgaggagagc
aaggagctccgcgagcacattcgacaaaccgaggtgcggttcgaaaacgagtccagcgaa
atgcaacagttgaaaagcgatgtggaaaagctaaccgtcctcattcgggaaaacgaacaa
gttttggcaaatgaccgtcgtttgtgtgactaccgcctgagaagtggtgacctacttgcc
gccttggagccacatagaaaacgttggaagagccagttgaagcaaaatgagaaaaagcag
aaggagctggttggtaacacgttgctcttcgcaattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTTCGCACTATTTTCGAGCCGA 404 43 334 Antisense
AAAACGGCACGCGGCAGAAGCCTGG 452 127 369 Antisense
GAGCGACAAGGCGTTTTTCATCAAG 129 387 414 Antisense
CATCAAGCTGGCCACTTGTGACGCG 553 213 432 Antisense
GATCGAGCCGAGTTCAACGCAAACA 634 417 502 Antisense
CGCGTGTCTTTGCCGATGGATCGGA 179 257 552 Antisense
TTTGGAGTTGGCTTGCACACTTCGA 220 667 582 Antisense
GAAAAGCTAACCGTCCTCATTCGGG 705 353 718 Antisense
TGACCGTCGTTTGTGTGACTACCGC 627 567 765 Antisense
TGAGAAGTGGTGACCTACTTGCCGC 77 567 791 Antisense
GTAACACGTTGCTCTTCGCAATTCA 584 461 887 Antisense
Sequence Source Affymetrix Proprietary Database