[Home] | [Total List]

[177503_at]

Description T07C5.4 /REP_DB=WormBase Gene ID /WP=CE06382 /TR=Q22299 /GB=CAA90300.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 05      6grp_cgc > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 47.7
(-0.6)
A 		2.9
(-3)
A 		4.7
(-2.9)
A 		117.1
(3)
A 		114
B 7.5
(-3)
A 		20.8
(0.3)
A 		28.8
(2.2)
A 		31.9
(3)
A 		24
C 39.8
(-0.2)
A 		9.4
(-2.8)
A 		7.3
(-3)
A 		76.9
(3)
A 		70
avr 31.7
(-1.1) 		11
(-3) 		13.6
(-2.8) 		75.3
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 90.7
(3)
A 		3.7
(-3)
A 		8.5
(-2.7)
A 		16.2
(-2.1)
A 		6.7
(-2.8)
A 		8.1
(-2.7)
A 		87
B 25
(1.6)
A 		8.6
(-2.3)
A 		29.1
(2.6)
A 		30.9
(3)
A 		5.6
(-3)
A 		8.1
(-2.4)
A 		25
C 49.1
(3)
A 		7.6
(-2.4)
A 		5.2
(-2.7)
A 		3.7
(-2.9)
A 		15.5
(-1.3)
A 		2.7
(-3)
A 		46
avr 54.9
(3) 		6.6
(-3) 		14.3
(-2) 		16.9
(-1.7) 		9.3
(-2.6) 		6.3
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.4
(3)
A 		0.6
(-3)
A 		1.2
(-2.8)
A 		17.1
(2.9)
A 		17
B 2.4
(-3)
A 		5.1
(0.7)
A 		6.7
(2.9)
A 		6.8
(3)
A 		4
C 13.2
(3)
A 		2.7
(-2.9)
A 		2.5
(-3)
A 		13
(2.9)
A 		11
avr 11
(2.2) 		2.8
(-3) 		3.5
(-2.6) 		12.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 16.7
(3)
A 		1.3
(-3)
A 		1.8
(-2.8)
A 		4.1
(-1.9)
A 		2
(-2.7)
A 		2
(-2.7)
A 		15
B 8.7
(3)
A 		2.9
(-2.4)
A 		7.1
(1.5)
A 		8.2
(2.5)
A 		2.3
(-3)
A 		3
(-2.3)
A 		6
C 18.2
(3)
A 		2.3
(-2.5)
A 		1.3
(-2.8)
A 		0.7
(-3)
A 		5
(-1.5)
A 		0.9
(-2.9)
A 		18
avr 14.5
(3) 		2.2
(-2.9) 		3.4
(-2.3) 		4.3
(-1.9) 		3.1
(-2.5) 		2
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177503_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17865
Sequence Type Exemplar sequence
Representative Public ID T07C5.4 NCBI
Target Description T07C5.4 /REP_DB=WormBase Gene ID /WP=CE06382 /TR=Q22299 /GB=CAA90300.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077719(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077719 NCBI Caenorhabditis elegans T07C5.4 (T07C5.4) mRNA, complete cds. 11/11 None
T07C5.4 ENSEMBL cdna:known chromosome:CEL140:X:12698865:12699969:-1 gene:T07C5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12698864-12699969(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-215
Ensembl T07C5.4
Entrez Gene 188211 Entrez gene
SwissProt Q22299 EMBL-EBI
WormBase CE06382 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90300 Hypothetical protein T07C5.4 [Caenorhabditis elegans] ref|NP_510120.1| T07C5.4 [Caenorhabditis elegans] 1.0E-176
blast CAA90294 Hypothetical protein F16H9.2 [Caenorhabditis elegans] ref|NP_510123.1| F16H9.2 [Caenorhabditis elegans] 1.0E-53
blast CAA90299 Hypothetical protein T07C5.2 [Caenorhabditis elegans] ref|NP_510122.1| T07C5.2 [Caenorhabditis elegans] 6.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 9.0E-9
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.6E-6
Sequence
Target Sequence 
>C. ELEGANS:177503_AT
atatctggataaaccggctggcctccactttgaatgctttgactggggactaatgagtca
gatcacagccattgaatacttgaaaaacttacactttacgaaatttctctcatcgagaga
tctcaaaaactttctatcgaactctaatttttcgttgattgttttaacaacaaatatggc
atcatatatgcgaaagcaaagttttgtgagttttccgaatggagccgatgtttacccatc
ttttgttgtgaacgattctttcattagccagaatctattaaacaaagttcgatctatatc
tggtttatcaaacaccggtcgtgatttaatcgcttcttatcaaaaagtgtacacatcatc
acttcttgaactctgctttaaaactcataaaaaaaaggccttcacgatttgtcgcttttt
atgtgtgttcaaccttgttatgaaagtacatgaacacacgaagaaatatcttactttgtt
tcagtacttttacccaaatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCTGGATAAACCGGCTGGCCTC 640 19 387 Antisense
GCCTCCACTTTGAATGCTTTGACTG 427 283 407 Antisense
GAGTCAGATCACAGCCATTGAATAC 689 399 441 Antisense
TACACTTTACGAAATTTCTCTCATC 163 643 476 Antisense
GTGAGTTTTCCGAATGGAGCCGATG 700 483 592 Antisense
GAGCCGATGTTTACCCATCTTTTGT 54 385 608 Antisense
ACCGGTCGTGATTTAATCGCTTCTT 187 89 700 Antisense
CATCATCACTTCTTGAACTCTGCTT 541 213 740 Antisense
AAAAAGGCCTTCACGATTTGTCGCT 680 123 778 Antisense
GTCGCTTTTTATGTGTGTTCAACCT 603 473 797 Antisense
GTTTCAGTACTTTTACCCAAATCAG 689 449 864 Antisense
Sequence Source Affymetrix Proprietary Database