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[177502_at]

Description ZC13.2 /REP_DB=WormBase Gene ID /WP=CE14986 /TR=Q94309 /GB=AAB07580.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 58.1
(2.6)
P 		19.3
(-2.1)
A 		12
(-3)
A 		61.6
(3)
A 		50
B 67.4
(3)
P 		36.4
(-0.8)
A 		18.7
(-3)
A 		54.1
(1.4)
A 		49
C 60
(1.6)
P 		38.7
(-0.7)
A 		16
(-3)
A 		74
(3)
P 		58
avr 61.8
(2.8) 		31.5
(-1) 		15.6
(-3) 		63.2
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 62.6
(3)
P 		25.9
(-2.1)
A 		27.6
(-1.9)
A 		21.3
(-2.8)
A 		19.6
(-3)
A 		24.6
(-2.3)
A 		43
B 47.4
(3)
P 		11.8
(-3)
A 		37.9
(1.4)
P 		36.3
(1.1)
M 		33.8
(0.7)
A 		21.9
(-1.3)
A 		36
C 17.2
(-2)
A 		31.7
(-0.1)
A 		56.5
(3)
P 		15.6
(-2.2)
A 		9
(-3)
A 		27.6
(-0.7)
A 		48
avr 42.4
(3) 		23.1
(-2.4) 		40.7
(2.5) 		24.4
(-2) 		20.8
(-3) 		24.7
(-1.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 21.1
(3)
P 		4.2
(-2.6)
A 		3.1
(-3)
A 		9
(-1)
A 		18
B 21.5
(3)
P 		9
(-1.4)
A 		4.3
(-3)
A 		11.5
(-0.5)
A 		17
C 19.9
(3)
P 		11.1
(-0.7)
A 		5.6
(-3)
A 		12.5
(-0.1)
P 		14
avr 20.8
(3) 		8.1
(-1.6) 		4.3
(-3) 		11
(-0.6) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 11.5
(3)
P 		9.2
(0.7)
A 		6
(-2.4)
A 		5.4
(-3)
A 		5.9
(-2.5)
A 		6
(-2.4)
A 		6
B 16.5
(3)
P 		3.9
(-3)
A 		9.2
(-0.5)
P 		9.6
(-0.3)
M 		13.7
(1.7)
A 		8.2
(-1)
A 		13
C 6.4
(-1.2)
A 		9.7
(0.5)
A 		14.4
(3)
P 		3.1
(-2.9)
A 		2.9
(-3)
A 		9.2
(0.3)
A 		12
avr 11.5
(3) 		7.6
(-1.3) 		9.9
(1.3) 		6
(-3) 		7.5
(-1.4) 		7.8
(-1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177502_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18487
Sequence Type Exemplar sequence
Representative Public ID ZC13.2 NCBI
Target Description ZC13.2 /REP_DB=WormBase Gene ID /WP=CE14986 /TR=Q94309 /GB=AAB07580.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075771
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZC13.2 ENSEMBL cdna:known chromosome:CEL140:X:880659:883047:1 gene:ZC13.2 None
NM_075771 NCBI Caenorhabditis elegans ZC13.2 (ZC13.2) mRNA, complete cds. None
SNAP00000043700 ENSEMBL cdna:SNAP chromosome:CEL140:X:880737:882616:1 None
GENEFINDER00000043708 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:881013:882616:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:880736-882241(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC13.2
Entrez Gene 180438 Entrez gene
SwissProt Q95Q41 EMBL-EBI
WormBase CE29614 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL13328 Hypothetical protein ZC13.2 [Caenorhabditis elegans] ref|NP_508172.1| ZC13.2 [Caenorhabditis elegans] 1.0E-179
blast T25936 hypothetical protein ZC13.2 - Caenorhabditis elegans 1.0E-150
blast AAL13328 Hypothetical protein ZC13.2 [Caenorhabditis elegans] ref|NP_508172.1| ZC13.2 [Caenorhabditis elegans] 1.0E-130
blast T25936 hypothetical protein ZC13.2 - Caenorhabditis elegans 1.0E-101
blast CAE63606 Hypothetical protein CBG08097 [Caenorhabditis briggsae] 3.0E-89
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508172.1 4 40-62,171-193,206-228,243-265
ZC13.2 4 40-62,171-193,206-228,243-265
SNAP00000043700 4 40-62,171-193,206-228,243-265
GENEFINDER00000043708 3 79-101,114-136,151-173
Sequence
Target Sequence 
>C. ELEGANS:177502_AT
gtggagttttcttcatattcacaattcggtgtgaagtgctagatactgcaattttcaata
caaccatattgattttggttgtcttgtttcaaattgcacacgcgggacttgtcacttcgt
taatatttttccagagagaaatgagttggagaacgctgtcaataacaataggtactattg
ttattctgttctgttgcgcgttcttaggatttgtctgcataacactcaactgtggatggg
tgaaatacattgactatatgcacggaaagaagaaggtatgttataggggtttttcaccca
agaagaaactcttgtttctgcactttcatcttatgctattagcgcggactagaattttga
aatcaatgactgtgctttctaaagttgtactcaaaatgtcacagtcgctgaacaaaattt
cagaagcactgaccaaaattttagaatcactgaccaacatttcagaagcactgaccaaaa
atatagtaaaacagtccaaaatttttaacgtactgacaaaaaatatagaagcactgacca
aaattttcataaacaaacaacacagttttactagcaatttcccatatttcaacactgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAGTTTTCTTCATATTCACAAT 628 489 566 Antisense
TCAAATTGCACACGCGGGACTTGTC 256 629 654 Antisense
GGGACTTGTCACTTCGTTAATATTT 162 495 669 Antisense
TATTGTTATTCTGTTCTGTTGCGCG 584 665 741 Antisense
GTTGCGCGTTCTTAGGATTTGTCTG 37 441 758 Antisense
GATTTGTCTGCATAACACTCAACTG 283 427 773 Antisense
GAAACTCTTGTTTCTGCACTTTCAT 261 357 870 Antisense
CACTTTCATCTTATGCTATTAGCGC 471 197 886 Antisense
GTACTCAAAATGTCACAGTCGCTGA 516 459 952 Antisense
CACAGTTTTACTAGCAATTTCCCAT 676 195 1126 Antisense
CAATTTCCCATATTTCAACACTGCT 201 181 1140 Antisense
Sequence Source Affymetrix Proprietary Database