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[177501_at]

Description F42G4.2 /REP_DB=WormBase Gene ID /WP=CE10320 /TR=Q9XVN6 /GB=CAB03093.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 28      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.1
(-1.6)
A 		6.1
(-0.5)
A 		1.6
(-3)
A 		12.3
(3)
A 		11
B 3.3
(-3)
A 		9.1
(3)
A 		8.8
(2.7)
A 		4.9
(-1.3)
A 		6
C 12.8
(3)
A 		4.1
(-1.5)
A 		1.2
(-3)
A 		5.2
(-0.9)
A 		12
avr 6.7
(1.7) 		6.4
(1.2) 		3.9
(-3) 		7.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 4.3
(-3)
A 		2.9
(-3)
A 		8.8
(-2.8)
A 		10.2
(-2.8)
A 		88.8
(-0.2)
A 		186.3
(3)
M 		183
B 1.8
(-3)
A 		4.1
(-2.9)
A 		2.6
(-3)
A 		12.6
(-2.4)
A 		60.9
(0.5)
A 		103.1
(3)
A 		101
C 1.8
(-3)
A 		3.2
(-2.9)
A 		4.1
(-2.9)
A 		3.9
(-2.9)
A 		96.8
(2)
A 		116.9
(3)
A 		115
avr 2.6
(-3) 		3.4
(-3) 		5.2
(-2.9) 		8.9
(-2.7) 		82.2
(0.6) 		135.4
(3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.5
(1.7)
A 		1.3
(0.9)
A 		0.4
(-3)
A 		1.8
(3)
A 		1
B 1
(-3)
A 		2.2
(3)
A 		2
(2)
A 		1
(-3)
A 		1
C 4.2
(3)
A 		1.2
(-1.7)
A 		0.4
(-3)
A 		0.9
(-2.2)
A 		4
avr 2.2
(3) 		1.6
(0.2) 		0.9
(-3) 		1.2
(-1.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1
(-3)
A 		1.9
(-2.9)
A 		2.6
(-2.8)
A 		26.8
(0.5)
A 		45.4
(3)
M 		45
B 0.6
(-3)
A 		1.4
(-2.9)
A 		0.6
(-3)
A 		3.3
(-2.6)
A 		24.7
(0.8)
A 		38.5
(3)
A 		38
C 0.7
(-3)
A 		1
(-3)
A 		1
(-3)
A 		0.8
(-3)
A 		31.3
(1.8)
A 		39.1
(3)
A 		38
avr 0.7
(-3) 		1.1
(-2.9) 		1.2
(-2.9) 		2.2
(-2.8) 		27.6
(1) 		41
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2624
Sequence Type Exemplar sequence
Representative Public ID F42G4.2 NCBI
Target Description F42G4.2 /REP_DB=WormBase Gene ID /WP=CE10320 /TR=Q9XVN6 /GB=CAB03093.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064374(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064374 NCBI Caenorhabditis elegans F42G4.2 (F42G4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000028443 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13047883:13050654:1 11/11 None
F42G4.2 ENSEMBL cdna:known chromosome:CEL140:II:13047837:13050654:1 gene:F42G4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028434 5/11 Cross Hyb Matching Probes None
SNAP00000028435 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13048403-13050651(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42G4.2
Entrez Gene 174949 Entrez gene
SwissProt Q9XVN6 EMBL-EBI
WormBase CE37914 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03093 Hypothetical protein F42G4.2 [Caenorhabditis elegans] ref|NP_496775.2| F42G4.2 [Caenorhabditis elegans] 0.0
blast CAA92604 Hypothetical protein F44D12.8 [Caenorhabditis elegans] ref|NP_501809.1| F44D12.8 [Caenorhabditis elegans] 1.0E-101
blast NP_491796 T08B2.11 [Caenorhabditis elegans] gb|AAG00018.1| Hypothetical protein T08B2.11 [Caenorhabditis elegans] 9.0E-98
blast NP_491796 T08B2.11 [Caenorhabditis elegans] gb|AAG00018.1| Hypothetical protein T08B2.11 [Caenorhabditis elegans] 2.0E-94
Sequence
Target Sequence 
>C. ELEGANS:177501_AT
ttttcaagcctaacggagagccggtatgggttgtcgatgaacttgcgccgggtgaatgtg
tgaacaacgaggacggagttgtggttaaaaatccagaattagctaaagctatggcagcag
ataatctggtactggaggaaattgatcttatagatatggtggagaaatacttgaagtgta
ccatgcctagaggcacattaattccagaaaattacaatttcgacgcacttgctccaatcg
atattttggaatcaaattctgaatatgtcagcccagagactgttacttacaatactttca
agaacttggtggacttgagcgaaggtgccataaaacgtttctcaatgaagagggatggaa
tggatgatagatcaaaactcagtcaagataaggcgattgaaacgacggctacttccacaa
tgactgtccttccaaatctgaaagcatcagaaacgtctcaattgaaaacgtgcgagtttg
gagtcactttcaatctgaagcatgttatttgtctgagttatgatcgtaagcatccaatcg
catcaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCAAGCCTAACGGAGAGCCGGT 305 671 452 Antisense
GAGAGCCGGTATGGGTTGTCGATGA 237 395 467 Antisense
GAACTTGCGCCGGGTGAATGTGTGA 371 349 490 Antisense
TACAATTTCGACGCACTTGCTCCAA 35 643 664 Antisense
GTCAGCCCAGAGACTGTTACTTACA 206 465 718 Antisense
AAGGTGCCATAAAACGTTTCTCAAT 117 161 773 Antisense
GGCGATTGAAACGACGGCTACTTCC 397 537 843 Antisense
GACGGCTACTTCCACAATGACTGTC 678 375 855 Antisense
ACAATGACTGTCCTTCCAAATCTGA 241 113 868 Antisense
GCGAGTTTGGAGTCACTTTCAATCT 292 289 923 Antisense
CGTAAGCATCCAATCGCATCAATCA 235 247 976 Antisense
Sequence Source Affymetrix Proprietary Database