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[177500_at]

Description C04G2.5 /REP_DB=WormBase Gene ID /WP=CE05213 /TR=Q17628 /GB=CAA94672.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 11.1
(-1.2)
A 		21.8
(3)
A 		6.5
(-3)
A 		15.2
(0.4)
A 		15
B 16.7
(0.7)
A 		1.4
(-3)
A 		26
(3)
A 		2.8
(-2.7)
A 		25
C 4.5
(-2.5)
A 		9.7
(-1.8)
A 		1
(-3)
A 		44.3
(3)
A 		43
avr 10.8
(-3) 		11
(-2.9) 		11.2
(-2.8) 		20.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 5.2
(-2.8)
A 		1.8
(-3)
A 		4
(-2.8)
A 		36.1
(-0.5)
A 		55.2
(0.9)
M 		84.4
(3)
P 		83
B 4
(-2.8)
A 		1.5
(-3)
A 		2.3
(-2.9)
A 		22.1
(-1)
A 		61.7
(2.7)
P 		64.7
(3)
P 		63
C 3.7
(-2.9)
A 		23.5
(-1.5)
A 		2.2
(-3)
A 		29.4
(-1.1)
A 		35.8
(-0.6)
P 		87.4
(3)
P 		85
avr 4.3
(-2.9) 		8.9
(-2.5) 		2.8
(-3) 		29.2
(-0.9) 		50.9
(0.8) 		78.8
(3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.1
(1.8)
A 		4.7
(3)
A 		1.7
(-3)
A 		2.2
(-2)
A 		3
B 5.3
(2.3)
A 		0.3
(-3)
A 		6
(3)
A 		0.6
(-2.7)
A 		6
C 1.5
(-2)
A 		2.8
(-0.9)
A 		0.3
(-3)
A 		7.5
(3)
A 		7
avr 3.6
(3) 		2.6
(-3) 		2.7
(-2.4) 		3.4
(1.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 1
(-2.9)
A 		0.6
(-3)
A 		0.9
(-2.9)
A 		9.1
(-0.4)
A 		16.6
(1.8)
M 		20.5
(3)
P 		20
B 1.4
(-2.8)
A 		0.5
(-3)
A 		0.6
(-3)
A 		5.9
(-1.7)
A 		25.1
(3)
P 		24.1
(2.8)
P 		25
C 1.4
(-2.8)
A 		7.2
(-1.6)
A 		0.6
(-3)
A 		5.9
(-1.9)
A 		11.6
(-0.7)
P 		29.3
(3)
P 		29
avr 1.3
(-2.8) 		2.8
(-2.5) 		0.7
(-3) 		7
(-1.4) 		17.8
(1.3) 		24.6
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8689
Sequence Type Exemplar sequence
Representative Public ID C04G2.5 NCBI
Target Description C04G2.5 /REP_DB=WormBase Gene ID /WP=CE05213 /TR=Q17628 /GB=CAA94672.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069432(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069432 NCBI Caenorhabditis elegans C04G2.5 (C04G2.5) mRNA, complete cds. 11/11 None
SNAP00000040133 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10094224:10095239:-1 9/11 None
GENEFINDER00000040152 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10094224:10095197:-1 11/11 None
C04G2.5 ENSEMBL cdna:known chromosome:CEL140:IV:10094224:10095197:-1 gene:C04G2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10094229-10095203(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04G2.5
Entrez Gene 182233 Entrez gene
SwissProt Q17628 EMBL-EBI
WormBase CE05213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94672 Hypothetical protein C04G2.5 [Caenorhabditis elegans] ref|NP_501833.1| C04G2.5 [Caenorhabditis elegans] 1.0E-131
blast CAA94672 Hypothetical protein C04G2.5 [Caenorhabditis elegans] ref|NP_501833.1| C04G2.5 [Caenorhabditis elegans] 1.0E-117
blast CAA91088 Hypothetical protein B0457.4 [Caenorhabditis elegans] ref|NP_495896.1| B0457.4 [Caenorhabditis elegans] 6.0E-20
blast CAB04688 Hypothetical protein T05F1.5 [Caenorhabditis elegans] ref|NP_492559.1| T05F1.5 [Caenorhabditis elegans] 6.0E-20
Sequence
Target Sequence 
>C. ELEGANS:177500_AT
cagacgcttctttggtaataacttcgtcgagactggctatgcaaggagccgatgagacct
ctgattggacaccaaataaatattcctggtttaagctcgttaccccaaacccggtggaaa
cacgtgtagttcaacaaaaagcacaaatgaaaggactaaaaatccataaaatggtgcaca
actttattccgtcaaggaaacaaggatatcttggatactacaacttcgacgtcaaaagct
atgaggagtctgagaaggccaggaatttattcccaacagactttgttgatgccttctgtt
gtcaacatcttcttggaaagaacgagcaagaatttgtcttccatgcggttaacgaaaatg
atctgaagattctctgttgcattgcaacatattgcaaggaaacgaagctggacgcaccgt
tggatccaatgcagcacctcaacaacctcaacttgttctacgaagcgattaataatgaga
gggcattcattattatgaaagatttcatgtcagataatgggatgaagtatctttgtcgac
tcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGACGCTTCTTTGGTAATAACTTC 642 205 104 Antisense
TAACTTCGTCGAGACTGGCTATGCA 62 639 122 Antisense
GATGAGACCTCTGATTGGACACCAA 611 411 154 Antisense
TGGATACTACAACTTCGACGTCAAA 350 551 315 Antisense
GACTTTGTTGATGCCTTCTGTTGTC 161 373 382 Antisense
GAATTTGTCTTCCATGCGGTTAACG 531 325 433 Antisense
TGAAGATTCTCTGTTGCATTGCAAC 165 575 467 Antisense
AACGAAGCTGGACGCACCGTTGGAT 185 145 504 Antisense
CGTTGGATCCAATGCAGCACCTCAA 56 245 521 Antisense
CAACCTCAACTTGTTCTACGAAGCG 288 185 546 Antisense
GGATGAAGTATCTTTGTCGACTCAA 232 513 623 Antisense
Sequence Source Affymetrix Proprietary Database