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[177499_at]

Description C38H2.2 /REP_DB=WormBase Gene ID /WP=CE00924 /TR=Q18515 /GB=CAA84707.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 08      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_total > 04      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 204.5
(3)
P 		188.4
(1.3)
P 		167.9
(-0.8)
P 		146.5
(-3)
P 		58
B 160.9
(-3)
P 		221.8
(3)
P 		175
(-1.6)
P 		166.5
(-2.4)
P 		61
C 163.2
(-0.5)
P 		205.4
(3)
P 		133.4
(-3)
P 		172.1
(0.2)
P 		72
avr 176.2
(-0.8) 		205.2
(3) 		158.8
(-3) 		161.7
(-2.6) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 189.4
(3)
P 		124
(-1.2)
P 		95.3
(-3)
P 		124
(-1.2)
P 		176.1
(2.2)
P 		95.1
(-3)
P 		94
B 193.6
(3)
P 		171.3
(1.6)
P 		132
(-0.9)
P 		178.6
(2)
P 		134.8
(-0.8)
P 		100
(-3)
P 		94
C 227
(3)
P 		194.7
(1.8)
P 		160.5
(0.4)
P 		142.3
(-0.3)
P 		117.2
(-1.2)
M 		70.9
(-3)
P 		156
avr 203.3
(3) 		163.3
(0.9) 		129.3
(-0.9) 		148.3
(0.1) 		142.7
(-0.2) 		88.7
(-3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 74.4
(3)
P 		40.9
(-0.8)
P 		43.9
(-0.5)
P 		21.4
(-3)
P 		53
B 51.3
(1.9)
P 		54.8
(3)
P 		40.6
(-1.4)
P 		35.5
(-3)
P 		19
C 54
(2)
P 		59
(3)
P 		46.5
(0.5)
P 		29
(-3)
P 		30
avr 59.9
(3) 		51.6
(1.4) 		43.7
(-0.1) 		28.6
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 34.9
(-0.4)
P 		44.1
(1.3)
P 		20.8
(-3)
P 		31.5
(-1)
P 		53.1
(3)
P 		23.2
(-2.6)
P 		32
B 67.4
(3)
P 		57
(1.2)
P 		32.1
(-3)
P 		47.3
(-0.4)
P 		54.8
(0.9)
P 		37.3
(-2.1)
P 		35
C 84.1
(3)
P 		59.4
(0.5)
P 		40.8
(-1.3)
P 		28.6
(-2.5)
P 		37.9
(-1.6)
M 		23.7
(-3)
P 		60
avr 62.1
(3) 		53.5
(1.5) 		31.2
(-2.5) 		35.8
(-1.6) 		48.6
(0.6) 		28.1
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177499_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6461
Sequence Type Exemplar sequence
Representative Public ID C38H2.2 NCBI
Target Description C38H2.2 /REP_DB=WormBase Gene ID /WP=CE00924 /TR=Q18515 /GB=CAA84707.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066892(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066892 NCBI Caenorhabditis elegans C38H2.2 (C38H2.2) mRNA, complete cds. 11/11 A 
SNAP00000026779 ENSEMBL cdna:SNAP chromosome:CEL140:III:10381671:10384645:1 11/11 None
GENEFINDER00000026796 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10381671:10384645:1 11/11 None
C38H2.2 ENSEMBL cdna:known chromosome:CEL140:III:10381658:10385251:1 gene:C38H2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10379283-10384641(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C38H2.2
Entrez Gene 176455 Entrez gene
SwissProt Q18515 EMBL-EBI
WormBase CE32602 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.4223.1.S1_AT similar to core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 cfa
DROSOPHILA_2:1627589_S_AT dm
DROSGENOME1:142643_AT dm
CHICKEN:GGA.1326.1.S1_AT core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 gga
CHICKEN:GGAAFFX.6124.1.S1_AT core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 gga
HG-U133A:219439_AT core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HG-U133_PLUS_2:219439_AT core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HG-FOCUS:219439_AT core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HG-U133A_2:219439_AT core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HU35KSUBB:RC_AA233261_AT core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
U133_X3P:G9910143_3P_AT core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HG-U95B:45624_AT core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HU35KSUBB:RC_F11087_AT Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HU35KSUBC:RC_AA443328_AT Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
U133_X3P:HS.239666.0.S2_3P_AT Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
U133_X3P:HS.239666.0.S1_3P_AT Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HG-U133_PLUS_2:226105_AT Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HG-U133B:226105_AT Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HG-U133_PLUS_2:226107_AT Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HG-U133B:226107_AT Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HG-U95B:47956_AT Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HG-U95B:59146_S_AT Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
HU35KSUBC:RC_D12064_AT Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 hs
MOE430A:1450745_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase mm
MOUSE430_2:1450745_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase mm
MOUSE430A_2:1450745_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase mm
MOE430A:1422772_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase mm
MOUSE430A_2:1422772_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase mm
MOUSE430_2:1422772_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase mm
MU11KSUBA:AA183114_F_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase mm
MG-U74BV2:108109_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase mm
MG-U74BV2:163476_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase mm
MOE430B:1428490_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase mm
MOUSE430_2:1428490_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase mm
MOE430B:1446011_AT Core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase, mRNA (cDNA clone IMAGE:5040878) mm
MOUSE430_2:1446011_AT Core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase, mRNA (cDNA clone IMAGE:5040878) mm
MU19KSUBA:TC25716_F_AT Core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase, mRNA (cDNA clone IMAGE:5040878) mm
RAE230A:1387446_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase rn
RAT230_2:1387446_AT core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase rn
Protein Similarities
Method ID Description E-Value
blast CAA84707 Hypothetical protein C38H2.2 [Caenorhabditis elegans] ref|NP_499293.2| C38H2.2 [Caenorhabditis elegans] gb|AAG36940.1| core1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase [Caenorhabditis elegans] 0.0
blast CAE71479 Hypothetical protein CBG18398 [Caenorhabditis briggsae] 0.0
blast XP_392784 PREDICTED: similar to CG9520-PB, isoform B [Apis mellifera] ref|XP_623149.1| PREDICTED: similar to CG9520-PB, isoform B [Apis mellifera] 1.0E-107
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499293.2 1 7-29
C38H2.2 1 7-29
SNAP00000026779 1 7-29
GENEFINDER00000026796 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:177499_AT
gaaagccgacgacgatacctatgtggtgatggaaaatctccggttcatgctattggctca
ttcaccggatgagccaattcactttggatgcaagtttaagccattcacacagggaggata
tcatagtggtggagctggatatgtgctcagtcgggaggcactgaaaaaattcattgaagt
agcgctgccggacaaatcgttgtgctctcagaatcatggtggagccgaggatgcggagat
gggcaaatgcttggagaaggttggagtgaaagctggagattccagagatgccgatggaca
tcatagattcatgcctttcgtgccggaacatcacttgtcgcctggccacgttgaccccaa
gttctggttctggcagtacacttactacccaatggatcaaggacctacgtgttgctctga
ttacgcagtctccttccactacgtcaacccgaacttgatgtatgtgctcgagtatctcat
ctatcacttgaagcctttcggtatcgatcgcgcgattcgagtgccaaagaacgaaacaat
aatccatacggcttattcgatctctcgatccgaacgtggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCCGACGACGATACCTATGTG 569 359 651 Antisense
GGTTCATGCTATTGGCTCATTCACC 357 507 692 Antisense
AAGTAGCGCTGCCGGACAAATCGTT 581 155 827 Antisense
ATCATAGATTCATGCCTTTCGTGCC 499 29 950 Antisense
TTGACCCCAAGTTCTGGTTCTGGCA 358 701 1001 Antisense
GGTTCTGGCAGTACACTTACTACCC 81 507 1016 Antisense
GTGTTGCTCTGATTACGCAGTCTCC 385 485 1059 Antisense
GTGCTCGAGTATCTCATCTATCACT 692 479 1114 Antisense
GTATCGATCGCGCGATTCGAGTGCC 636 449 1151 Antisense
ATCCATACGGCTTATTCGATCTCTC 601 39 1192 Antisense
CGATCTCTCGATCCGAACGTGGACA 86 249 1208 Antisense
Sequence Source Affymetrix Proprietary Database