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[177498_at]

Description D2030.8 /REP_DB=WormBase Gene ID /WP=CE09085 /TR=P90793 /GB=CAA98120.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 15      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 65.1
(3)
A 		4.1
(-3)
A 		14.9
(-1.9)
A 		33.7
(-0.1)
A 		61
B 37.6
(0.6)
A 		12
(-3)
A 		50.2
(2.3)
A 		55
(3)
A 		43
C 55.9
(1.8)
A 		11.8
(-3)
A 		12.7
(-2.9)
A 		67.3
(3)
A 		56
avr 52.9
(3) 		9.3
(-3) 		25.9
(-0.7) 		52
(2.9) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 31.2
(-2.1)
A 		12.3
(-3)
A 		56.9
(-0.9)
A 		34.6
(-2)
A 		140.7
(3)
A 		99.9
(1.1)
A 		128
B 96.1
(2.5)
A 		6.5
(-3)
A 		62.5
(0.5)
A 		38.9
(-1)
A 		102.2
(2.9)
A 		103.5
(3)
P 		97
C 15.2
(-2.7)
A 		67.3
(-0.4)
A 		110.5
(1.6)
A 		9.1
(-3)
A 		33
(-1.9)
A 		142.7
(3)
P 		134
avr 47.5
(-1.6) 		28.7
(-2.9) 		76.6
(0.4) 		27.5
(-3) 		92
(1.4) 		115.4
(3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 23.7
(3)
A 		0.9
(-3)
A 		3.9
(-2.2)
A 		4.9
(-1.9)
A 		23
B 12
(3)
A 		3
(-3)
A 		11.6
(2.7)
A 		11.7
(2.8)
A 		9
C 18.5
(3)
A 		3.4
(-3)
A 		4.4
(-2.6)
A 		11.3
(0.1)
A 		15
avr 18.1
(3) 		2.4
(-3) 		6.6
(-1.4) 		9.3
(-0.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 5.7
(-2.8)
A 		4.4
(-3)
A 		12.4
(-1.7)
A 		8.8
(-2.3)
A 		42.5
(3)
A 		24.3
(0.1)
A 		38
B 33.4
(1.8)
A 		2.2
(-3)
A 		15.2
(-1)
A 		10.3
(-1.8)
A 		41.5
(3)
A 		38.6
(2.6)
P 		39
C 5.6
(-2.5)
A 		20.5
(-0.6)
A 		28.1
(0.4)
A 		1.8
(-3)
A 		10.7
(-1.8)
A 		47.8
(3)
P 		46
avr 14.9
(-1.4) 		9
(-2.6) 		18.6
(-0.7) 		7
(-3) 		31.6
(1.9) 		36.9
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177498_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.853
Sequence Type Exemplar sequence
Representative Public ID D2030.8 NCBI
Target Description D2030.8 /REP_DB=WormBase Gene ID /WP=CE09085 /TR=P90793 /GB=CAA98120.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059722
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000031291 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7599426:7602863:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059722 7/11 Cross Hyb Matching Probes None
SNAP00000031279 7/11 Cross Hyb Matching Probes None
D2030.8 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7598934-7602394(+) 96.2 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98120 Hypothetical protein D2030.8 [Caenorhabditis elegans] ref|NP_492123.1| D2030.8 [Caenorhabditis elegans] 0.0
blast CAE66620 Hypothetical protein CBG11955 [Caenorhabditis briggsae] 7.0E-73
blast XP_593566 PREDICTED: similar to D2030.8 isoform 1 [Bos taurus] ref|XP_869458.1| PREDICTED: similar to D2030.8 isoform 2 [Bos taurus] 9.0E-31
Sequence
Target Sequence 
>C. ELEGANS:177498_AT
cattgtgcaaccgagttcctcgaaaaatgtgataatggaaagcacaataacgaaatttta
catcaaaatctacgtgccatgtctcttgatcaatgcgaaatcacttcatctccgggtaca
agtgagaatccgaataatttggaatcattggatcacttgctaagagttttactctttttc
ggaaaattttacgagcgaagtcaacaagatgcgagtgttcacgaaagagcgtttgccgga
tctcttccttacgagttgtccagattctcacataaggatttagaaaacatttctgttatg
atgggtctcgacgcgcagagtattttttttgagtttttgcgacagcctcatatattttca
tcgaatttttccataaaatttttagcgaaaaactatcataaacttttctgtgcccattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGTGCAACCGAGTTCCTCGAAA 646 215 1342 Antisense
AAAATCTACGTGCCATGTCTCTTGA 460 133 1406 Antisense
GTGCCATGTCTCTTGATCAATGCGA 7 479 1415 Antisense
CAATGCGAAATCACTTCATCTCCGG 116 183 1432 Antisense
GAATCATTGGATCACTTGCTAAGAG 37 329 1483 Antisense
GAAAGAGCGTTTGCCGGATCTCTTC 214 359 1564 Antisense
TCTCTTCCTTACGAGTTGTCCAGAT 419 613 1582 Antisense
TTTCTGTTATGATGGGTCTCGACGC 256 671 1631 Antisense
GGTCTCGACGCGCAGAGTATTTTTT 638 501 1645 Antisense
TGCGACAGCCTCATATATTTTCATC 14 585 1679 Antisense
ATCATAAACTTTTCTGTGCCCATTT 150 31 1736 Antisense
Sequence Source Affymetrix Proprietary Database