[Home] | [Total List]

[177496_at]

Description D1086.1 /REP_DB=WormBase Gene ID /WP=CE09059 /TR=O17726 /GB=CAB04019.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_high_8_8 > 05      6grp_highest_nonorm > 94      6grp_total > 76      4grp_total > 03      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 97.4
(-2)
P 		66.9
(-3)
P 		74.1
(-2.8)
A 		254.7
(3)
P 		188
B 128.8
(-1.5)
M 		102
(-2.2)
A 		72.9
(-3)
A 		292.4
(3)
P 		220
C 103.6
(-2)
P 		80.5
(-2.7)
P 		73.2
(-3)
P 		247.4
(3)
P 		174
avr 109.9
(-1.9) 		83.1
(-2.7) 		73.4
(-3) 		264.8
(3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 689
1 2 3 4 5 6 range
A 361.5
(-3)
P 		364.5
(-3)
P 		757.8
(2.5)
P 		543.3
(-0.5)
P 		672.6
(1.3)
P 		797.1
(3)
P 		436
B 233.6
(-3)
P 		356.1
(-1.8)
P 		606.1
(0.5)
P 		509.4
(-0.4)
P 		518
(-0.3)
P 		865.8
(3)
P 		632
C 288.6
(-3)
P 		418.2
(-1.8)
P 		525.3
(-0.8)
P 		517.9
(-0.8)
P 		508.1
(-0.9)
P 		922.4
(3)
P 		634
avr 294.6
(-3) 		379.6
(-2.1) 		629.7
(0.5) 		523.5
(-0.6) 		566.2
(-0.1) 		861.8
(3) 		567
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 35.4
(2.5)
P 		14.5
(-3)
P 		19.4
(-1.7)
A 		37.3
(3)
P 		23
B 41.1
(0.2)
M 		25.2
(-1.9)
A 		16.9
(-3)
A 		62.3
(3)
P 		45
C 34.3
(0.6)
P 		23.1
(-3)
P 		25.5
(-2.2)
P 		41.7
(3)
P 		19
avr 36.9
(0.7) 		20.9
(-2.9) 		20.6
(-3) 		47.1
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 66.6
(-3)
P 		129.6
(-0.2)
P 		165
(1.3)
P 		137.8
(0.1)
P 		203
(3)
P 		194.1
(2.6)
P 		136
B 81.3
(-3)
P 		118.5
(-2.1)
P 		147.2
(-1.4)
P 		134.9
(-1.7)
P 		210.5
(0.2)
P 		322.8
(3)
P 		242
C 107
(-2.9)
P 		127.6
(-2.3)
P 		133.7
(-2.1)
P 		104.1
(-3)
P 		164.4
(-1.2)
P 		308.8
(3)
P 		205
avr 85
(-3) 		125.2
(-1.7) 		148.6
(-1) 		125.6
(-1.7) 		192.6
(0.4) 		275.2
(3) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177496_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12897
Sequence Type Exemplar sequence
Representative Public ID D1086.1 NCBI
Target Description D1086.1 /REP_DB=WormBase Gene ID /WP=CE09059 /TR=O17726 /GB=CAB04019.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074097 NCBI Caenorhabditis elegans D1086.1 (D1086.1) mRNA, complete cds. 11/11 None
SNAP00000017539 ENSEMBL cdna:SNAP chromosome:CEL140:V:14101498:14102877:1 11/11 None
GENEFINDER00000017548 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14101498:14102877:1 11/11 None
D1086.1 ENSEMBL cdna:known chromosome:CEL140:V:14101498:14102926:1 gene:D1086.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14101497-14102877(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1086.1
Entrez Gene 179909 Entrez gene
SwissProt O17726 EMBL-EBI
WormBase CE09059 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04019 Hypothetical protein D1086.1 [Caenorhabditis elegans] ref|NP_506498.1| D1086.1 [Caenorhabditis elegans] 3.0E-85
blast CAB04019 Hypothetical protein D1086.1 [Caenorhabditis elegans] ref|NP_506498.1| D1086.1 [Caenorhabditis elegans] 5.0E-69
blast CAE60990 Hypothetical protein CBG04726 [Caenorhabditis briggsae] 4.0E-65
blast CAE60990 Hypothetical protein CBG04726 [Caenorhabditis briggsae] 2.0E-50
Sequence
Target Sequence 
>C. ELEGANS:177496_AT
tatatttttgactattctcccatttttgctctttctatcaaaagctgaaaattctccact
tgattgctcaaaagatgatcttcaacttactgtaacatgtcgtccaaaacttgcaaaact
cacagatgaaatgaagaagaatccattgaattctggttttccatctgttgaaacattgaa
taaaatgtcaggatattgcaaggaagccatgagttgtgttagtccagccaagtgtccggc
aatcactgaaaaaatgagcaaatttgccacaatgtgcaagaccatcgacttcatgtctgg
accgtatgctcaatgtgcagcaaagctgaaagcaagcaacgacaaaacagagtgtgttca
atggtatttcagtgacaaatcaagaatgtcaaccgatcaaaaatgtgctcaattcaaagc
taaaaagcaatgtattgaaaaagattttggaaaggcgtgtggagattccacgttgaaaag
tttccgcgagaatatcaactacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATATTTTTGACTATTCTCCCATTT 440 661 24 Antisense
TCCCATTTTTGCTCTTTCTATCAAA 584 597 41 Antisense
AGCTGAAAATTCTCCACTTGATTGC 356 81 66 Antisense
GTAACATGTCGTCCAAAACTTGCAA 704 461 115 Antisense
GAATCCATTGAATTCTGGTTTTCCA 197 331 162 Antisense
GAAGCCATGAGTTGTGTTAGTCCAG 529 343 226 Antisense
GTTAGTCCAGCCAAGTGTCCGGCAA 494 447 241 Antisense
GCCACAATGTGCAAGACCATCGACT 392 279 289 Antisense
AGACCATCGACTTCATGTCTGGACC 525 69 302 Antisense
TGTCTGGACCGTATGCTCAATGTGC 186 559 317 Antisense
TTTCCGCGAGAATATCAACTACGTC 180 669 504 Antisense
Sequence Source Affymetrix Proprietary Database