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[177495_at]

Description C01F6.2 /REP_DB=WormBase Gene ID /WP=CE26968 /TR=Q17560 /GB=CAA92435.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      6grp_total > 88      4grp_total > 12      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 57.2
(-1.3)
A 		23.6
(-3)
A 		51.8
(-1.6)
P 		144.4
(3)
A 		121
B 66.5
(3)
A 		63.6
(2.7)
M 		3.1
(-3)
A 		57.8
(2.2)
A 		63
C 61.1
(-1.3)
A 		31.9
(-3)
A 		36.7
(-2.7)
A 		134.4
(3)
A 		103
avr 61.6
(-0.7) 		39.7
(-2.3) 		30.5
(-3) 		112.2
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 29.5
(-3)
A 		47.9
(-2.5)
A 		84.5
(-1.5)
P 		51.8
(-2.4)
A 		163.5
(0.6)
P 		255.1
(3)
P 		226
B 61.3
(-3)
P 		76.9
(-2.5)
A 		79.4
(-2.4)
P 		70.3
(-2.7)
M 		160
(0.3)
P 		240
(3)
P 		179
C 62.8
(-2.4)
A 		92.7
(-1.7)
P 		39.4
(-3)
A 		76.4
(-2.1)
P 		171.5
(0.2)
P 		283.6
(3)
P 		244
avr 51.2
(-3) 		72.5
(-2.4) 		67.8
(-2.5) 		66.2
(-2.6) 		165
(0.3) 		259.6
(3) 		208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 20.8
(2.9)
A 		5.1
(-3)
A 		13.5
(0.2)
P 		21.1
(3)
A 		16
B 21.2
(3)
A 		15.7
(1.4)
M 		0.7
(-3)
A 		12.3
(0.4)
A 		21
C 20.2
(1.9)
A 		9.2
(-3)
A 		12.8
(-1.4)
A 		22.7
(3)
A 		14
avr 20.7
(3) 		10
(-2.5) 		9
(-3) 		18.7
(2) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 5.4
(-3)
A 		17
(-1.8)
A 		18.4
(-1.6)
P 		13.1
(-2.2)
A 		49.3
(1.6)
P 		62.1
(3)
P 		57
B 21.3
(-2.8)
P 		25.6
(-2.4)
A 		19.3
(-2.9)
P 		18.6
(-3)
M 		65
(0.9)
P 		89.5
(3)
P 		71
C 23.3
(-2.1)
A 		28.3
(-1.7)
P 		10
(-3)
A 		15.4
(-2.6)
P 		55.5
(0.2)
P 		94.9
(3)
P 		85
avr 16.7
(-2.9) 		23.6
(-2.3) 		15.9
(-3) 		15.7
(-3) 		56.6
(0.7) 		82.2
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9768
Sequence Type Exemplar sequence
Representative Public ID C01F6.2 NCBI
Target Description C01F6.2 /REP_DB=WormBase Gene ID /WP=CE26968 /TR=Q17560 /GB=CAA92435.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069184(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069184 NCBI Caenorhabditis elegans C01F6.2 (C01F6.2) mRNA, complete cds. 11/11 None
SNAP00000031437 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9099908:9101540:1 11/11 None
GENEFINDER00000031448 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9099908:9101540:1 11/11 None
C01F6.2 ENSEMBL cdna:known chromosome:CEL140:IV:9099351:9101540:1 gene:C01F6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9099913-9101546(+) 93.71 100.0
Public Domain and Genome References
Gene Title
Ensembl C01F6.2
Entrez Gene 177732 Entrez gene
SwissProt Q17560 EMBL-EBI
WormBase CE26968 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92435 Hypothetical protein C01F6.2 [Caenorhabditis elegans] ref|NP_501585.1| C01F6.2 [Caenorhabditis elegans] 0.0
blast CAE74112 Hypothetical protein CBG21773 [Caenorhabditis briggsae] 1.0E-139
blast CAE74112 Hypothetical protein CBG21773 [Caenorhabditis briggsae] 1.0E-127
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501585.1 1 63-85
C01F6.2 1 63-85
SNAP00000031437 1 21-43
GENEFINDER00000031448 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:177495_AT
tggtgcatgtgatgccatttctccgcaagactctggaatggatcttcacggtatttcgaa
tgatttttttgggaaaattcaagatattatccaagcccaacttggagattctaatatttt
ggaagccacttccgatgagaatctttcggaaatgtcaatggttacagaaagtctcatgtc
tagtttagctgaaattgaaccatcgtttattgagactgatgttcaagaagcctcggaaac
atcatctcactgtgagccaaacctaggagcaaagcagactgttggaaatgagcaagatgc
tgatattgttattgatgattcacatttatttgctgaatctgaaaatgaatgcagtggaag
catccttgtcaaaggtggacaacagaaggtgttgttccgttggacagacgaaaaaccgac
tactgtagattccgttacattgactggttcattttttggttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGCATGTGATGCCATTTCTCCG 343 553 777 Antisense
CCATTTCTCCGCAAGACTCTGGAAT 263 271 791 Antisense
GGAATGGATCTTCACGGTATTTCGA 404 531 811 Antisense
GGAAGCCACTTCCGATGAGAATCTT 212 531 897 Antisense
GAAAGTCTCATGTCTAGTTTAGCTG 315 361 943 Antisense
AGAAGCCTCGGAAACATCATCTCAC 68 75 1002 Antisense
ATCTCACTGTGAGCCAAACCTAGGA 246 11 1020 Antisense
GCAGTGGAAGCATCCTTGTCAAAGG 314 311 1127 Antisense
GAAGGTGTTGTTCCGTTGGACAGAC 334 335 1161 Antisense
GATTCCGTTACATTGACTGGTTCAT 683 431 1204 Antisense
TTGACTGGTTCATTTTTTGGTTGGA 556 703 1216 Antisense
Sequence Source Affymetrix Proprietary Database