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[177494_at]

Description C11G6.1 /REP_DB=WormBase Gene ID /WP=CE05255 /TR=Q17907 /GB=CAA94111.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 52      6grp_cgc > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 87.3
(-0.9)
A 		150.1
(3)
A 		54.6
(-3)
A 		67.7
(-2.2)
A 		96
B 58.2
(-1.7)
A 		117.1
(3)
A 		93.1
(1.1)
A 		41.8
(-3)
A 		75
C 152.5
(3)
A 		62.2
(-1.8)
A 		117.7
(1.1)
A 		40.6
(-3)
A 		112
avr 99.3
(1.9) 		109.8
(3) 		88.5
(0.9) 		50
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 111.5
(3)
A 		111.8
(3)
P 		42.7
(-3)
A 		73.2
(-0.4)
A 		48.4
(-2.5)
A 		43.4
(-2.9)
A 		69
B 43.7
(0.7)
A 		51.3
(3)
A 		31.4
(-3)
A 		35
(-1.9)
A 		32.9
(-2.5)
A 		46
(1.4)
A 		20
C 77.1
(0.9)
P 		32.2
(-3)
A 		76.9
(0.9)
A 		39
(-2.4)
A 		101.1
(3)
A 		38.5
(-2.5)
A 		69
avr 77.4
(3) 		65.1
(0.9) 		50.3
(-1.7) 		49.1
(-1.9) 		60.8
(0.1) 		42.6
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 31.8
(2.8)
A 		32.6
(3)
A 		14.3
(-1.8)
A 		9.9
(-3)
A 		23
B 18.6
(-0.1)
A 		28.9
(3)
A 		21.6
(0.8)
A 		8.9
(-3)
A 		20
C 50.5
(3)
A 		17.9
(-1.5)
A 		41
(1.7)
A 		6.8
(-3)
A 		44
avr 33.6
(3) 		26.5
(1.3) 		25.6
(1.1) 		8.5
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 20.6
(-0.8)
A 		39.7
(3)
P 		9.3
(-3)
A 		18.6
(-1.2)
A 		14.6
(-2)
A 		10.6
(-2.7)
A 		30
B 15.2
(1.8)
A 		17.1
(2.9)
A 		7.6
(-3)
A 		9.3
(-1.9)
A 		13.4
(0.6)
A 		17.2
(3)
A 		10
C 28.6
(2)
P 		9.8
(-2.5)
A 		19.6
(-0.2)
A 		7.8
(-3)
A 		32.7
(3)
A 		12.9
(-1.8)
A 		25
avr 21.5
(2.6) 		22.2
(3) 		12.2
(-2.8) 		11.9
(-3) 		20.2
(1.8) 		13.6
(-2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177494_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17892
Sequence Type Exemplar sequence
Representative Public ID C11G6.1 NCBI
Target Description C11G6.1 /REP_DB=WormBase Gene ID /WP=CE05255 /TR=Q17907 /GB=CAA94111.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078256 NCBI Caenorhabditis elegans TAF (TBP-associated transcription factor) family member (taf-3) (taf-3) mRNA, complete cds. 11/11 None
SNAP00000002967 ENSEMBL cdna:SNAP chromosome:CEL140:X:16332364:16335854:1 11/11 None
GENEFINDER00000002973 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16332364:16345501:1 11/11 None
C11G6.1 ENSEMBL cdna:known chromosome:CEL140:X:16332364:16335854:1 gene:C11G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16332363-16335854(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol taf-3
Ensembl C11G6.1
Entrez Gene 181704 Entrez gene
SwissProt Q17907 EMBL-EBI
WormBase CE05255 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94111 Hypothetical protein C11G6.1 [Caenorhabditis elegans] ref|NP_510657.1| TAF (TBP-associated transcription factor) family member (taf-3) [Caenorhabditis elegans] 0.0
blast CAE69979 Hypothetical protein CBG16377 [Caenorhabditis briggsae] 1.0E-107
blast CAE69979 Hypothetical protein CBG16377 [Caenorhabditis briggsae] 1.0E-106
blast CAA94113 Hypothetical protein C11G6.3 [Caenorhabditis elegans] ref|NP_510658.1| C11G6.3 [Caenorhabditis elegans] 1.0E-50
blast CAE63407 Hypothetical protein CBG07847 [Caenorhabditis briggsae] 9.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 2.9E-19
Sequence
Target Sequence 
>C. ELEGANS:177494_AT
attcgggatcagttattgcgggcaaagagtaaaattgttctacccaactcagtcgttgca
ccaattcagactacgctgccaccagcacaacaaccagcaacagcgacgggaatggtgtca
ttgacgattgcgccgattctcgttccccagactagcatggagccggcgacaagtgttcca
gtcgtcggagctacagttgacattgactctgctccgttcctgttggccgagccagcactg
gaggtggagatcaaaactgaagatcaattccccgaaggaccatcgtcatctgttgccgct
gatactacgttggaatttggagaggatcaggagaagaagccgaagaaggagaaacgggac
aagagttcggaggagtacaaagagtacaagcgtttgaaaaaggagaagcgtcgcaaagag
cgagaagagcggaaatctgctgagaattgtgtgaagatcgaaaaggaaaagacgtctaca
ccggtcaagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGGGATCAGTTATTGCGGGCAA 195 11 1408 Antisense
TGCACCAATTCAGACTACGCTGCCA 100 579 1464 Antisense
CAACAACCAGCAACAGCGACGGGAA 641 189 1495 Antisense
GTGTCATTGACGATTGCGCCGATTC 552 485 1522 Antisense
AGCATGGAGCCGGCGACAAGTGTTC 572 77 1561 Antisense
CAAGTGTTCCAGTCGTCGGAGCTAC 677 183 1577 Antisense
ACAGTTGACATTGACTCTGCTCCGT 82 109 1600 Antisense
TGGCCGAGCCAGCACTGGAGGTGGA 179 545 1631 Antisense
TCAATTCCCCGAAGGACCATCGTCA 244 633 1671 Antisense
CTGTTGCCGCTGATACTACGTTGGA 265 239 1697 Antisense
AAAGACGTCTACACCGGTCAAGCAA 234 1 1875 Antisense
Sequence Source Affymetrix Proprietary Database