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[177493_at]

Description W05B2.4 /REP_DB=WormBase Gene ID /WP=CE20146 /TR=Q9XVG4 /GB=CAB03473.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 29.2
(-3)
A 		56.1
(2.3)
A 		47.8
(0.6)
A 		59.9
(3)
M 		31
B 23
(0.1)
A 		8.6
(-3)
A 		15.1
(-1.6)
A 		36.3
(3)
A 		28
C 31.6
(0.5)
A 		39.9
(3)
A 		19.5
(-3)
A 		40
(3)
A 		21
avr 27.9
(-2.9) 		34.9
(-0.5) 		27.5
(-3) 		45.4
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 47
(3)
A 		9.6
(-2)
A 		27.1
(0.3)
A 		2.5
(-3)
A 		25.4
(0.1)
A 		18.3
(-0.9)
A 		45
B 18
(0.2)
A 		15
(-0.5)
A 		4.1
(-3)
A 		4.5
(-2.9)
A 		30.2
(3)
A 		14.2
(-0.7)
A 		26
C 30.3
(0.4)
A 		27.7
(0)
A 		49.2
(3)
A 		5.9
(-3)
A 		37.5
(1.4)
A 		29.8
(0.3)
A 		43
avr 31.8
(3) 		17.4
(-0.1) 		26.8
(1.9) 		4.3
(-3) 		31
(2.8) 		20.8
(0.6) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.6
(-0.1)
A 		12.2
(2.5)
A 		12.5
(3)
A 		8.8
(-3)
M 		4
B 7.3
(2.6)
A 		2.1
(-3)
A 		3.5
(-1.5)
A 		7.7
(3)
A 		6
C 10.5
(1.7)
A 		11.5
(3)
A 		6.8
(-3)
A 		6.8
(-3)
A 		5
avr 9.5
(3) 		8.6
(0.2) 		7.6
(-3) 		7.8
(-2.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.7
(3)
A 		3.4
(-0.9)
A 		5.9
(0.9)
A 		0.6
(-3)
A 		7.7
(2.3)
A 		4.5
(-0.1)
A 		8
B 6.3
(-0.2)
A 		5
(-0.9)
A 		1
(-3)
A 		1.2
(-2.9)
A 		12.3
(3)
A 		5.3
(-0.7)
A 		11
C 11.2
(2.3)
A 		8.4
(0.8)
A 		12.5
(3)
A 		1.2
(-3)
A 		12.1
(2.8)
A 		10
(1.7)
A 		11
avr 8.7
(1.8) 		5.6
(-0.2) 		6.5
(0.4) 		1
(-3) 		10.7
(3) 		6.6
(0.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6405
Sequence Type Exemplar sequence
Representative Public ID W05B2.4 NCBI
Target Description W05B2.4 /REP_DB=WormBase Gene ID /WP=CE20146 /TR=Q9XVG4 /GB=CAB03473.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067006(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067006 NCBI Caenorhabditis elegans W05B2.4 (W05B2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000036399 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10969902:10981725:1 11/11 None
SNAP00000036389 ENSEMBL cdna:SNAP chromosome:CEL140:III:10977127:10981725:1 11/11 None
W05B2.4 ENSEMBL cdna:known chromosome:CEL140:III:10969902:10981725:1 gene:W05B2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10969897-10981721(+) 99.87 100.0
Public Domain and Genome References
Gene Title
Ensembl W05B2.4
Entrez Gene 189209 Entrez gene
SwissProt Q9XVG4 EMBL-EBI
WormBase CE20146 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03473 Hypothetical protein W05B2.4 [Caenorhabditis elegans] ref|NP_499407.1| W05B2.4 [Caenorhabditis elegans] 0.0
blast CAE71354 Hypothetical protein CBG18257 [Caenorhabditis briggsae] 0.0
blast XP_786177 PREDICTED: similar to axonemal dynein heavy chain 7, partial [Strongylocentrotus purpuratus] 1.0E-19
Sequence
Target Sequence 
>C. ELEGANS:177493_AT
gagccgcgctataaacatcatcgcaaatacgaatcagcatgtcgtgatccttgttcacct
cgatttttgttacgaaaaggtggagccgagatggatggagcagatcaagttatggattga
gtgcccgaatacccagcatttggtgtctgatgaacaacttcacacaatgggtgaacagtt
aatcgagtgcgaaaagaatttggctacacaaatgcaaactattggattacgacttccggg
gcaacgaatgtgcaaatatctccctgtggagaccctcaaggagccacaggctttgcgaaa
agttttagaagcacggattttcgatgcacttcatgtcatgtttcttgtggatccgcagtt
taagacagacttctcttggtgcaccattttccatgtcccgacaatcgaaaaatcagaatt
actatcaaaagtttcaaagataatttcggattgcaaagttgacgaagctgctcagataat
agtgtccactttctttattgtaaagaagtatcttcaatcaataggaattgcattgtatgg
taccgtatttagtcagctgtttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCGCGCTATAAACATCATCGCA 62 387 6201 Antisense
ATCAGCATGTCGTGATCCTTGTTCA 441 27 6233 Antisense
TCCTTGTTCACCTCGATTTTTGTTA 77 589 6248 Antisense
GCCCGAATACCCAGCATTTGGTGTC 93 287 6323 Antisense
GATTACGACTTCCGGGGCAACGAAT 155 431 6425 Antisense
GAATGTGCAAATATCTCCCTGTGGA 169 333 6446 Antisense
GGATTTTCGATGCACTTCATGTCAT 264 509 6515 Antisense
ATGTCATGTTTCTTGTGGATCCGCA 157 49 6533 Antisense
TAAGACAGACTTCTCTTGGTGCACC 370 637 6561 Antisense
CCATTTTCCATGTCCCGACAATCGA 43 271 6584 Antisense
GGTACCGTATTTAGTCAGCTGTTTG 188 505 6739 Antisense
Sequence Source Affymetrix Proprietary Database