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[177492_at]

Description F41E7.8 /REP_DB=WormBase Gene ID /WP=CE19867 /TR=Q9XVW3 /GB=CAA92131.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      6grp_highest_nonorm > 34      6grp_total > 40      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2010
1 2 3 4 range
A 1760.4
(2.9)
P 		1619
(2.4)
P 		1800.9
(3)
P 		79.6
(-3)
A 		1721
B 1547.6
(1.8)
P 		1916.4
(3)
P 		1793.4
(2.6)
P 		41.5
(-3)
A 		1875
C 1623.5
(1.7)
P 		2051.3
(3)
P 		1943.9
(2.7)
P 		89.9
(-3)
A 		1961
avr 1643.8
(2.3) 		1862.2
(3) 		1846.1
(2.9) 		70.3
(-3) 		1792

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4238
1 2 3 4 5 6 range
A 2589
(-0.1)
P 		2414.6
(-0.4)
P 		4775.3
(3)
P 		4015.5
(1.9)
P 		1484.8
(-1.7)
P 		551.4
(-3)
P 		4224
B 2783.6
(1.4)
P 		2914.9
(1.7)
P 		3260.9
(2.4)
P 		3541.6
(3)
P 		1635
(-1)
P 		705.1
(-3)
P 		2837
C 2574.6
(1.3)
P 		2848.3
(1.9)
P 		2810.4
(1.8)
P 		3389.1
(3)
P 		1492.6
(-1)
P 		537.3
(-3)
P 		2852
avr 2649.1
(1) 		2725.9
(1.2) 		3615.5
(2.9) 		3648.7
(3) 		1537.5
(-1.2) 		597.9
(-3) 		3051
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 669
1 2 3 4 range
A 641
(3)
P 		351.4
(0.2)
P 		470.8
(1.4)
P 		11.7
(-3)
A 		629
B 493.5
(3)
P 		473.3
(2.7)
P 		415.6
(2)
P 		8.9
(-3)
A 		485
C 537.4
(1.7)
P 		589.8
(2.2)
P 		677.5
(3)
P 		15.2
(-3)
A 		662
avr 557.3
(3) 		471.5
(2.1) 		521.3
(2.6) 		11.9
(-3) 		545

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 906
1 2 3 4 5 6 range
A 477.3
(-0.7)
P 		858.8
(1.8)
P 		1040
(3)
P 		1018.4
(2.9)
P 		448
(-0.9)
P 		134.2
(-3)
P 		906
B 968.5
(3)
P 		970.3
(3)
P 		791.8
(1.5)
P 		938
(2.7)
P 		664.3
(0.4)
P 		262.9
(-3)
P 		707
C 954.3
(3)
P 		869.1
(2.3)
P 		715.3
(1.1)
P 		681.5
(0.9)
P 		483
(-0.7)
P 		179.9
(-3)
P 		774
avr 800
(2.2) 		899.4
(3) 		849
(2.6) 		879.3
(2.8) 		531.8
(-0.1) 		192.3
(-3) 		707
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177492_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17115
Sequence Type Exemplar sequence
Representative Public ID F41E7.8 NCBI
Target Description F41E7.8 /REP_DB=WormBase Gene ID /WP=CE19867 /TR=Q9XVW3 /GB=CAA92131.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077327(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077327 NCBI Caenorhabditis elegans F41E7.8 (F41E7.8) mRNA, complete cds. 11/11 None
SNAP00000016492 ENSEMBL cdna:SNAP chromosome:CEL140:X:10306551:10306811:1 11/11 None
GENEFINDER00000016500 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10306551:10306811:1 11/11 None
F41E7.8 ENSEMBL cdna:known chromosome:CEL140:X:10306534:10306878:1 gene:F41E7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10306550-10306811(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41E7.8
Entrez Gene 181239 Entrez gene
SwissProt Q9XVW3 EMBL-EBI
WormBase CE19867 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509728.1 1 5-24
F41E7.8 1 5-24
SNAP00000016492 1 5-24
GENEFINDER00000016500 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:177492_AT
atgcagcttaacgttttgttggtttttcttgctaccattattggacttgccagtgcgcaa
tgggggtatggtcgcccatatggaggatatggtggatatggtggtggctatggaggatac
ggaccacgaccatggggaccgagaccttggggtccacgtccaacagttattgagaagacg
gtcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAGCTTAACGTTTTGTTGGTTT 482 43 13 Antisense
TGTTGGTTTTTCTTGCTACCATTAT 534 563 29 Antisense
TTATTGGACTTGCCAGTGCGCAATG 201 679 50 Antisense
GGACTTGCCAGTGCGCAATGGGGGT 277 523 55 Antisense
GCCAGTGCGCAATGGGGGTATGGTC 626 275 61 Antisense
GTGCGCAATGGGGGTATGGTCGCCC 85 479 65 Antisense
GCAATGGGGGTATGGTCGCCCATAT 104 315 69 Antisense
ATGGAGGATACGGACCACGACCATG 247 51 122 Antisense
TACGGACCACGACCATGGGGACCGA 439 623 130 Antisense
GGTCCACGTCCAACAGTTATTGAGA 641 501 163 Antisense
AACAGTTATTGAGAAGACGGTCATT 13 109 174 Antisense
Sequence Source Affymetrix Proprietary Database