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[177491_at]

Description C06C3.7 /REP_DB=WormBase Gene ID /WP=CE00888 /TR=Q17714 /GB=CAA85314.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 16.5
(-3)
A 		20.7
(-2.5)
A 		28.6
(-1.6)
A 		70.1
(3)
P 		54
B 40.4
(1.9)
A 		1.4
(-3)
A 		7.4
(-2.2)
A 		48.7
(3)
A 		47
C 14.7
(-0.9)
A 		4.6
(-3)
A 		19.8
(0.2)
A 		32.9
(3)
A 		28
avr 23.9
(-0.8) 		8.9
(-3) 		18.6
(-1.6) 		50.6
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 4.1
(-3)
A 		17.8
(-1.1)
A 		47.7
(3)
A 		4.5
(-2.9)
A 		5.8
(-2.8)
A 		15.2
(-1.5)
A 		44
B 26.9
(1)
A 		15.1
(-2.9)
A 		33.1
(3)
A 		24
(0)
A 		22.1
(-0.6)
A 		14.8
(-3)
A 		18
C 38.6
(0.7)
A 		51.7
(3)
A 		23.6
(-1.8)
A 		21.7
(-2.2)
A 		29.1
(-0.9)
A 		16.8
(-3)
A 		35
avr 23.2
(-0.6) 		28.2
(0.9) 		34.8
(3) 		16.7
(-2.7) 		19
(-1.9) 		15.6
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6
(-1.4)
A 		4.5
(-3)
A 		7.5
(0.1)
A 		10.3
(3)
P 		6
B 12.9
(3)
A 		0.3
(-3)
A 		1.7
(-2.3)
A 		10.4
(1.8)
A 		13
C 4.9
(0.9)
A 		1.3
(-3)
A 		6.9
(3)
A 		5.5
(1.5)
A 		6
avr 7.9
(2.3) 		2
(-3) 		5.4
(0) 		8.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.8
(-3)
A 		6.3
(0.4)
A 		10.4
(3)
A 		1.1
(-2.8)
A 		1.8
(-2.4)
A 		3.7
(-1.2)
A 		10
B 9.4
(3)
A 		5
(-3)
A 		8
(1.1)
A 		6.4
(-1.1)
A 		9
(2.5)
A 		5.5
(-2.3)
A 		4
C 14.3
(2.2)
A 		15.8
(3)
A 		6
(-2.2)
A 		4.4
(-3)
A 		9.4
(-0.4)
A 		5.6
(-2.4)
A 		11
avr 8.2
(2) 		9
(3) 		8.1
(1.9) 		4
(-3) 		6.7
(0.2) 		4.9
(-1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177491_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3552
Sequence Type Exemplar sequence
Representative Public ID C06C3.7 NCBI
Target Description C06C3.7 /REP_DB=WormBase Gene ID /WP=CE00888 /TR=Q17714 /GB=CAA85314.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063599 NCBI Caenorhabditis elegans C06C3.7 (C06C3.7) mRNA, complete cds. 11/11 None
SNAP00000008812 ENSEMBL cdna:SNAP chromosome:CEL140:II:9385460:9386188:1 11/11 None
GENEFINDER00000008815 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9385460:9386304:1 11/11 None
C06C3.7 ENSEMBL cdna:known chromosome:CEL140:II:9385460:9386188:1 gene:C06C3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039071 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9385456-9386185(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06C3.7
Entrez Gene 182304 Entrez gene
SwissProt Q17714 EMBL-EBI
WormBase CE00888 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85314 Hypothetical protein C06C3.7 [Caenorhabditis elegans] ref|NP_496000.1| C06C3.7 [Caenorhabditis elegans] 9.0E-71
blast CAA85314 Hypothetical protein C06C3.7 [Caenorhabditis elegans] ref|NP_496000.1| C06C3.7 [Caenorhabditis elegans] 1.0E-67
Sequence
Target Sequence 
>C. ELEGANS:177491_AT
atggcaaacaggaactctgcaaacaagagagacattctcggagatttgctctcactgagc
agcaacaaaactgttaatctgaacgagatggcacatggtcagggaaagagaaaaatggca
tcgattgacgggcaaaaggagaatccgaagagaattaagatgagccagcacatgactgcc
aaggaagttaagattcctctattgcgaacgccagatgaagaagctcggaaaatcgaaaaa
ctccgtcgagaagcccgtatcaagcgatcgaaggaggttcactatgatgcagcagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCAAACAGGAACTCTGCAAACA 272 53 37 Antisense
GACATTCTCGGAGATTTGCTCTCAC 237 371 67 Antisense
GAACGAGATGGCACATGGTCAGGGA 402 347 117 Antisense
AAAATGGCATCGATTGACGGGCAAA 205 133 148 Antisense
GATGAGCCAGCACATGACTGCCAAG 20 413 195 Antisense
TAAGATTCCTCTATTGCGAACGCCA 372 635 225 Antisense
ATTGCGAACGCCAGATGAAGAAGCT 669 1 237 Antisense
TCCGTCGAGAAGCCCGTATCAAGCG 108 595 278 Antisense
GAAGCCCGTATCAAGCGATCGAAGG 674 343 286 Antisense
AAGCGATCGAAGGAGGTTCACTATG 2 149 298 Antisense
GAGGTTCACTATGATGCAGCAGAGC 462 403 310 Antisense
Sequence Source Affymetrix Proprietary Database