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[177490_at]

Description Y69H2.5 /REP_DB=WormBase Gene ID /WP=CE22823 /TR=Q9U1U5 /GB=CAB63402.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 12      6grp_total > 37      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 433
1 2 3 4 range
A 217
(-1.7)
P 		172.6
(-3)
A 		234.5
(-1.3)
P 		384.9
(3)
P 		212
B 239.1
(-1)
P 		245.2
(-0.9)
A 		97.1
(-3)
A 		530
(3)
A 		433
C 240.8
(0.1)
P 		216.5
(-0.7)
P 		147.3
(-3)
P 		331.1
(3)
P 		184
avr 232.3
(-1.3) 		211.4
(-1.8) 		159.6
(-3) 		415.3
(3) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 192
(3)
P 		153.3
(1)
M 		94.4
(-2)
A 		75.1
(-3)
A 		77.3
(-2.9)
A 		179.9
(2.4)
P 		117
B 175.2
(3)
P 		130.8
(0.7)
P 		120.4
(0.1)
A 		101.5
(-0.9)
A 		61.8
(-3)
A 		118.9
(0)
P 		113
C 140.7
(3)
P 		138.8
(2.9)
P 		75.3
(-2.1)
A 		63
(-3)
A 		101.2
(-0.1)
A 		106.9
(0.4)
A 		78
avr 169.3
(3) 		141
(1.1) 		96.7
(-1.9) 		79.9
(-3) 		80.1
(-3) 		135.2
(0.7) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 79
(3)
P 		37.5
(-3)
A 		61.3
(0.4)
P 		56.3
(-0.3)
P 		42
B 76.2
(0.6)
P 		60.6
(-0.5)
A 		22.5
(-3)
A 		112.9
(3)
A 		90
C 79.7
(3)
P 		62.3
(-0.7)
P 		51.3
(-3)
P 		55.8
(-2)
P 		28
avr 78.3
(3) 		53.5
(-1.5) 		45
(-3) 		75
(2.4) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 35.4
(-0.2)
P 		54.5
(3)
M 		20.5
(-2.8)
A 		19.1
(-3)
A 		23.3
(-2.3)
A 		43.8
(1.2)
P 		35
B 61
(3)
P 		43.5
(0.1)
P 		29.2
(-2.3)
A 		26.9
(-2.7)
A 		25.1
(-3)
A 		44.3
(0.2)
P 		36
C 52.1
(3)
P 		42.4
(1.5)
P 		19.2
(-2)
A 		12.7
(-3)
A 		32.7
(0)
A 		35.8
(0.5)
A 		39
avr 49.5
(3) 		46.8
(2.5) 		23
(-2.3) 		19.6
(-3) 		27
(-1.5) 		41.3
(1.4) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12600
Sequence Type Exemplar sequence
Representative Public ID Y69H2.5 NCBI
Target Description Y69H2.5 /REP_DB=WormBase Gene ID /WP=CE22823 /TR=Q9U1U5 /GB=CAB63402.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075241, NM_075243, NM_075244, NM_075242
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000002606 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18658765:18667381:-1 None
NM_075242 NCBI Caenorhabditis elegans Y69H2.3a (Y69H2.3) mRNA, complete cds. A 
Y69H2.3b ENSEMBL cdna:known chromosome:CEL140:V:18658681:18666670:-1 gene:Y69H2.3 A 
Y69H2.3c ENSEMBL cdna:known chromosome:CEL140:V:18658765:18666670:-1 gene:Y69H2.3 A 
Y69H2.3d.1 ENSEMBL cdna:known chromosome:CEL140:V:18662165:18666690:-1 gene:Y69H2.3 None
Y69H2.3a.2 ENSEMBL cdna:known chromosome:CEL140:V:18662272:18666692:-1 gene:Y69H2.3 None
Y69H2.3a.1 ENSEMBL cdna:known chromosome:CEL140:V:18662272:18666690:-1 gene:Y69H2.3 None
Y69H2.3d.2 ENSEMBL cdna:known chromosome:CEL140:V:18662170:18666692:-1 gene:Y69H2.3 None
NM_075244 NCBI Caenorhabditis elegans Y69H2.3d (Y69H2.3) mRNA, complete cds. A 
NM_075243 NCBI Caenorhabditis elegans Y69H2.3b (Y69H2.3) mRNA, complete cds. A 
NM_075241 NCBI Caenorhabditis elegans Y69H2.3c (Y69H2.3) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18666294-18666819(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y69H2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54473 Hypothetical protein Y69H2.3b [Caenorhabditis elegans] ref|NP_507644.2| Y69H2.3b [Caenorhabditis elegans] 0.0
blast CAD56616 Hypothetical protein Y69H2.3c [Caenorhabditis elegans] ref|NP_507642.2| Y69H2.3c [Caenorhabditis elegans] 0.0
blast CAE73283 Hypothetical protein CBG20701 [Caenorhabditis briggsae] 0.0
blast CAD56617 Hypothetical protein Y69H2.3d [Caenorhabditis elegans] ref|NP_507645.2| Y69H2.3d [Caenorhabditis elegans] 0.0
blast CAB54472 Hypothetical protein Y69H2.3a [Caenorhabditis elegans] ref|NP_507643.2| Y69H2.3a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.6E-20
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 8.4E-11
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 3.3E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.9E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.1E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.0E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.7E-12
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.9E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.1E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.0E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.7E-12
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 6.1E-17
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 6.1E-17
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.6E-20
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 8.4E-11
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 3.3E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.9E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.1E-8
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.0E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.7E-12
Sequence
Target Sequence 
>C. ELEGANS:177490_AT
tgttttccgcacttttgatgtctgatttctcgattttctggtttttttattataatgttt
ttcctgaaactttatgttttgagtttccgagtttcggagcgatgcagtatattgtgctgc
tcagcgttctgctcatcggagcaaacgctcaactttcagcgacaagaggtaagtttttcc
aacctaaaagtgtacctaaacccctttcagaccaagaatgcaaagaaaacgagagcttcc
agacgtgtggcacggcttgcgagccgacttgcgggcttccgactccgactttttgcacac
tgcaatgcgtcatgggatgtcagtgtaacagtggattcttccgcagaacttcggataatc
gttgtgttgagcagaaggactgcaatgttgcggcgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTTCCGCACTTTTGATGTCTGA 360 561 14 Antisense
TGATGTCTGATTTCTCGATTTTCTG 26 567 29 Antisense
TATGTTTTGAGTTTCCGAGTTTCGG 175 651 86 Antisense
ATATTGTGCTGCTCAGCGTTCTGCT 328 19 122 Antisense
GCGTTCTGCTCATCGGAGCAAACGC 160 291 137 Antisense
GAGCAAACGCTCAACTTTCAGCGAC 213 391 152 Antisense
AAACCCCTTTCAGACCAAGAATGCA 468 107 211 Antisense
TCCAGACGTGTGGCACGGCTTGCGA 669 589 251 Antisense
TGCACACTGCAATGCGTCATGGGAT 57 577 307 Antisense
ACAGTGGATTCTTCCGCAGAACTTC 403 107 341 Antisense
GAAGGACTGCAATGTTGCGGCGAAT 1 335 387 Antisense
Sequence Source Affymetrix Proprietary Database